[Home] | [Total List]

[176100_at]

Description ZK688.4 /REP_DB=WormBase Gene ID /WP=CE00462 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 13.2
(-2)
A 		4.6
(-3)
A 		24.1
(-0.7)
A 		55
(3)
A 		50
B 6.3
(-2.7)
A 		42.9
(3)
A 		4.5
(-3)
A 		4.2
(-3)
A 		39
C 4.2
(-3)
A 		4
(-3)
A 		30.5
(3)
A 		22.6
(1.2)
A 		27
avr 7.9
(-3) 		17.2
(-0.1) 		19.7
(0.6) 		27.3
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 41.2
(3)
A 		16
(-1.9)
A 		25.3
(-0.1)
A 		28.5
(0.5)
A 		14.7
(-2.2)
A 		10.6
(-3)
A 		31
B 5.2
(-2.4)
A 		36
(3)
A 		1.8
(-3)
A 		3.5
(-2.7)
A 		29.9
(1.9)
A 		30.9
(2.1)
A 		34
C 32.4
(0.1)
A 		52
(2.5)
A 		49.2
(2.2)
A 		7.2
(-3)
A 		21.6
(-1.2)
A 		55.9
(3)
A 		49
avr 26.3
(0.7) 		34.7
(3) 		25.4
(0.4) 		13.1
(-3) 		22.1
(-0.5) 		32.5
(2.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.8
(0.2)
A 		1
(-3)
A 		6.3
(1.5)
A 		8.1
(3)
A 		7
B 2
(-2.3)
A 		10.6
(3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		10
C 1.4
(-2.9)
A 		1.2
(-3)
A 		10.6
(3)
A 		3.8
(-1.3)
A 		9
avr 2.7
(-3) 		4.3
(-0.1) 		6
(3) 		4.3
(-0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.6
(3)
A 		5.7
(0.7)
A 		5.5
(0.5)
A 		7.2
(2.5)
A 		4.4
(-0.8)
A 		2.6
(-3)
A 		5
B 1.8
(-2.3)
A 		12
(2.9)
A 		0.4
(-3)
A 		0.9
(-2.7)
A 		12.2
(3)
A 		11.5
(2.6)
A 		12
C 12
(0.7)
A 		15.9
(2)
A 		12.5
(0.8)
A 		1.5
(-3)
A 		7
(-1.1)
A 		18.7
(3)
A 		17
avr 7.1
(-0.1) 		11.2
(3) 		6.1
(-0.8) 		3.2
(-3) 		7.9
(0.5) 		10.9
(2.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6988
Sequence Type Exemplar sequence
Representative Public ID ZK688.4 NCBI
Target Description ZK688.4 /REP_DB=WormBase Gene ID /WP=CE00462 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066315 NCBI Caenorhabditis elegans ZK688.4 (ZK688.4) mRNA, complete cds. 11/11 None
ZK688.4 ENSEMBL cdna:known chromosome:CEL140:III:7894948:7895194:1 gene:ZK688.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043642 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7894945-7895192(+) 97.55 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK688.4
Entrez Gene 191406 Entrez gene
SwissProt P34674 EMBL-EBI
WormBase CE00462 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28229 Hypothetical protein ZK688.4 [Caenorhabditis elegans] ref|NP_498716.1| ZK688.4 [Caenorhabditis elegans] sp|P34674|YO24_CAEEL Hypothetical protein ZK688.4 in chromosome III 7.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498716.1 1 15-37
ZK688.4 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:176100_AT
acactctgatcttatttagaaccgttcactctgtctccaatttctacattttctccagta
ccattctgcttacgtcagcagtaattcttgcaatatttttcttttttggcgatggatttt
tccgagaaaagtatcgcagagagttctccacaaattccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTCTGATCTTATTTAGAACCGT 67 111 17 Antisense
ATTTAGAACCGTTCACTCTGTCTCC 434 15 30 Antisense
CACTCTGTCTCCAATTTCTACATTT 27 199 43 Antisense
CTCCAATTTCTACATTTTCTCCAGT 91 233 51 Antisense
ACATTTTCTCCAGTACCATTCTGCT 587 105 62 Antisense
TCCAGTACCATTCTGCTTACGTCAG 46 591 70 Antisense
GCTTACGTCAGCAGTAATTCTTGCA 345 305 84 Antisense
AGCAGTAATTCTTGCAATATTTTTC 574 75 93 Antisense
TCTTTTTTGGCGATGGATTTTTCCG 648 611 116 Antisense
GAAAAGTATCGCAGAGAGTTCTCCA 111 355 142 Antisense
CAGAGAGTTCTCCACAAATTCCAAA 384 205 153 Antisense
Sequence Source Affymetrix Proprietary Database