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[176098_s_at]

Description F44B9.5 /REP_DB=WormBase Gene ID /WP=CE24973 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 62      6grp_total > 64      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 423.6
(3)
P 		422.9
(2.9)
P 		361.4
(-2.5)
P 		356.2
(-3)
P 		67
B 487.5
(3)
P 		365.9
(-3)
P 		402.4
(-1.2)
P 		405.8
(-1)
P 		122
C 422
(-3)
P 		447.9
(0.1)
P 		425.1
(-2.6)
P 		472.3
(3)
P 		50
avr 444.4
(3) 		412.2
(-1) 		396.3
(-3) 		411.4
(-1.1) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 448.5
(-0.5)
P 		396.8
(-2.2)
P 		560.4
(3)
P 		515.1
(1.6)
P 		370.1
(-3)
P 		493.2
(0.9)
P 		190
B 415.4
(-2.6)
P 		486.1
(-1.1)
P 		675.3
(3)
P 		545.1
(0.2)
P 		396.5
(-3)
P 		520.3
(-0.3)
P 		279
C 303.3
(-3)
P 		558.9
(1.8)
P 		547.5
(1.6)
P 		624.4
(3)
P 		325
(-2.6)
P 		586.1
(2.3)
P 		321
avr 389.1
(-2.3) 		480.6
(0) 		594.4
(3) 		561.5
(2.1) 		363.9
(-3) 		533.2
(1.4) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 154.2
(3)
P 		91.8
(-0.7)
P 		94.5
(-0.5)
P 		52.1
(-3)
P 		102
B 155.5
(3)
P 		90.4
(-2.7)
P 		93.2
(-2.4)
P 		86.5
(-3)
P 		69
C 139.7
(2.3)
P 		128.8
(1.3)
P 		148.2
(3)
P 		79.6
(-3)
P 		69
avr 149.8
(3) 		103.7
(-0.6) 		112
(0.1) 		72.7
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 82.7
(-3)
P 		141.1
(3)
P 		122
(1)
P 		130.6
(1.9)
P 		111.7
(-0)
P 		120.1
(0.8)
P 		58
B 144.5
(-3)
P 		161.8
(-0.9)
P 		164
(-0.6)
P 		144.4
(-3)
P 		161.1
(-1)
P 		194
(3)
P 		50
C 112.4
(-2.5)
P 		170.5
(1.3)
P 		139.3
(-0.8)
P 		125.6
(-1.7)
P 		105.2
(-3)
P 		196.2
(3)
P 		91
avr 113.2
(-3) 		157.8
(1.7) 		141.8
(0) 		133.5
(-0.9) 		126
(-1.7) 		170.1
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6921
Sequence Type Exemplar sequence
Representative Public ID F44B9.5 NCBI
Target Description F44B9.5 /REP_DB=WormBase Gene ID /WP=CE24973 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066345 NCBI Caenorhabditis elegans F44B9.5 (F44B9.5) mRNA, complete cds. 11/11 None
SNAP00000005266 ENSEMBL cdna:SNAP chromosome:CEL140:III:8013813:8016461:-1 11/11 None
GENEFINDER00000005275 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8013813:8016461:-1 11/11 None
F44B9.5.1 ENSEMBL cdna:known chromosome:CEL140:III:8013736:8016461:-1 gene:F44B9.5 11/11 None
F44B9.5.2 ENSEMBL cdna:known chromosome:CEL140:III:8013752:8016462:-1 gene:F44B9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8013810-8016459(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44B9.5
Entrez Gene 176127 Entrez gene
SwissProt P34426 EMBL-EBI
WormBase CE24973 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592132_AT similar to Ancient ubiquitous protein 1 precursor cfa
CANINE:1585497_S_AT similar to Ancient ubiquitous protein 1 precursor cfa
CANINE:1585496_AT similar to Ancient ubiquitous protein 1 precursor cfa
CANINE_2:CFA.11504.1.A1_S_AT similar to Ancient ubiquitous protein 1 precursor cfa
HG-U133_PLUS_2:220525_S_AT ancient ubiquitous protein 1 hs
HG-U133A:220525_S_AT ancient ubiquitous protein 1 hs
HG-FOCUS:220525_S_AT ancient ubiquitous protein 1 hs
HG-U133A_2:220525_S_AT ancient ubiquitous protein 1 hs
HU35KSUBB:RC_W49791_AT ancient ubiquitous protein 1 hs
U133_X3P:G6912259_3P_A_AT ancient ubiquitous protein 1 hs
HG-U95B:44750_AT ancient ubiquitous protein 1 hs
MG-U74AV2:93809_AT ancient ubiquitous protein mm
MU11KSUBA:U41736_S_AT ancient ubiquitous protein mm
MOE430A:1415742_AT ancient ubiquitous protein mm
MOE430B:1415742_AT ancient ubiquitous protein mm
MOUSE430A_2:1415742_AT ancient ubiquitous protein mm
MOUSE430_2:1415742_AT ancient ubiquitous protein mm
MU19KSUBA:TC15578_AT Ancient ubiquitous protein, mRNA (cDNA clone MGC:11483 IMAGE:3962982) mm
MU19KSUBA:TC15578_G_AT Ancient ubiquitous protein, mRNA (cDNA clone MGC:11483 IMAGE:3962982) mm
MU19KSUBB:TC32380_AT Ancient ubiquitous protein, mRNA (cDNA clone MGC:11483 IMAGE:3962982) mm
MU19KSUBB:TC32380_G_AT Ancient ubiquitous protein, mRNA (cDNA clone MGC:11483 IMAGE:3962982) mm
MU19KSUBB:TC32882_AT Ancient ubiquitous protein, mRNA (cDNA clone MGC:11483 IMAGE:3962982) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28032 Hypothetical protein F44B9.5 [Caenorhabditis elegans] ref|NP_498746.1| F44B9.5 [Caenorhabditis elegans] sp|P34426|YL35_CAEEL Hypothetical protein F44B9.5 in chromosome III 0.0
blast CAE75049 Hypothetical protein CBG22962 [Caenorhabditis briggsae] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR003892 EMBL-EBI Ubiquitin system component Cue 1.6E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498746.1 1 33-55
F44B9.5.1 1 33-55
F44B9.5.2 1 33-55
SNAP00000005266 1 33-55
GENEFINDER00000005275 1 33-55
Sequence
Target Sequence 
>C. ELEGANS:176098_S_AT
acttggtgtttcgaggtgtcttcagtagttcaacccgtctcagtgcgtgtgtggcgtccg
tatccttggaaagtttcagtttcagtattgggttcttcatggtggactgatcttttctat
ttctttgcacttccgtttactgttatcactgtcgaatatcttccgaaaatggaaagacga
gagaatgaatcactcgaagaattcaccgcccgagttgccgaaacgttggctggaaatttg
aagattgcagtgtcaaagtttggaatttcggacgcaacagaagcagcaaaacggcttaga
acagatagagaacgtgcgaaaaaagttgtcgttagagagaagacttcacctagacttgcg
gatcctcgtcaaatggacgaatgtgcaatgagaatcaaacaatcatttccatcattccat
ttatctgcaattcgacgtgatttggagaaaactcgtagtcaaactacaactgttaataat
ttgaaagctggtaaaatttcatcatcagcatcggatggtcaaactggaaaggttacattg
gacgctggtacgtggcgtggagtattcgacaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGGTGTTTCGAGGTGTCTTCAG 149 105 556 Antisense
AGGTGTCTTCAGTAGTTCAACCCGT 528 57 569 Antisense
TGGCGTCCGTATCCTTGGAAAGTTT 411 543 607 Antisense
GTATTGGGTTCTTCATGGTGGACTG 581 451 640 Antisense
GATCTTTTCTATTTCTTTGCACTTC 491 419 664 Antisense
GCACTTCCGTTTACTGTTATCACTG 136 317 682 Antisense
GCCCGAGTTGCCGAAACGTTGGCTG 3 287 763 Antisense
AGACTTCACCTAGACTTGCGGATCC 283 69 896 Antisense
GACTTGCGGATCCTCGTCAAATGGA 168 371 908 Antisense
GTTACATTGGACGCTGGTACGTGGC 363 443 1087 Antisense
CGTGGCGTGGAGTATTCGACAATCG 361 243 1106 Antisense
Sequence Source Affymetrix Proprietary Database