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[176097_at]

Description ZK688.7 /REP_DB=WormBase Gene ID /WP=CE00465 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 101.3
(-1.8)
A 		101.7
(-1.8)
A 		88
(-3)
A 		156.7
(3)
A 		69
B 115.5
(-0.1)
M 		100
(-2)
A 		91.4
(-3)
A 		141
(3)
P 		50
C 110
(-3)
A 		112.9
(-2.7)
A 		123.2
(-1.5)
A 		164.4
(3)
A 		54
avr 108.9
(-2.1) 		104.9
(-2.5) 		100.9
(-3) 		154
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 115.5
(3)
A 		91.7
(-1.8)
A 		115.7
(3)
M 		85.5
(-3)
P 		114.4
(2.7)
A 		112.4
(2.3)
P 		30
B 82
(-3)
A 		119.1
(0.8)
A 		135.8
(2.5)
P 		125.1
(1.4)
A 		122
(1.1)
P 		140.7
(3)
P 		59
C 95.1
(-3)
A 		107.5
(-1.2)
A 		103
(-1.8)
A 		135.7
(3)
A 		108.4
(-1)
P 		98.9
(-2.4)
P 		41
avr 97.5
(-3) 		106.1
(-0.5) 		118.2
(3) 		115.4
(2.2) 		114.9
(2) 		117.3
(2.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 36.9
(3)
A 		22.1
(-3)
A 		23
(-2.6)
A 		22.9
(-2.7)
A 		15
B 36.8
(3)
M 		24.7
(-1.7)
A 		21.2
(-3)
A 		30.1
(0.4)
P 		16
C 36.4
(0.4)
A 		32.5
(-1.1)
A 		42.9
(3)
A 		27.7
(-3)
A 		15
avr 36.7
(3) 		26.4
(-3) 		29
(-1.5) 		26.9
(-2.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.3
(-3)
A 		32.6
(2.1)
A 		25.2
(-1.2)
M 		21.7
(-2.8)
P 		34.5
(3)
A 		27.4
(-0.2)
P 		13
B 28.5
(-3)
A 		39.6
(-0.2)
A 		33
(-1.9)
P 		33.1
(-1.9)
A 		49.6
(2.3)
P 		52.5
(3)
P 		24
C 35.3
(3)
A 		32.8
(1.4)
A 		26.2
(-3)
A 		27.3
(-2.3)
A 		35.1
(2.9)
P 		33.1
(1.5)
P 		9
avr 28.4
(-2.5) 		35
(0.7) 		28.1
(-2.7) 		27.4
(-3) 		39.7
(3) 		37.7
(2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7394
Sequence Type Exemplar sequence
Representative Public ID ZK688.7 NCBI
Target Description ZK688.7 /REP_DB=WormBase Gene ID /WP=CE00465 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066320 NCBI Caenorhabditis elegans ZK688.7 (ZK688.7) mRNA, complete cds. 11/11 None
ZK688.7 ENSEMBL cdna:known chromosome:CEL140:III:7910776:7913483:-1 gene:ZK688.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043632 7/11 Cross Hyb Matching Probes None
GENEFINDER00000043640 7/11 Cross Hyb Matching Probes None
SNAP00000043633 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043647 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7910773-7913481(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK688.7
Entrez Gene 191407 Entrez gene
SwissProt P34677 EMBL-EBI
WormBase CE00465 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28225 Hypothetical protein ZK688.7 [Caenorhabditis elegans] ref|NP_498721.1| ZK688.7 [Caenorhabditis elegans] sp|P34677|YO27_CAEEL Hypothetical protein ZK688.7 in chromosome III 1.0E-120
blast CAE66893 Hypothetical protein CBG12274 [Caenorhabditis briggsae] 3.0E-40
blast CAE66898 Hypothetical protein CBG12280 [Caenorhabditis briggsae] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.6E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498721.1 2 153-175,180-202
ZK688.7 2 153-175,180-202
Sequence
Target Sequence 
>C. ELEGANS:176097_AT
atatgtttgacatcaggactcccaaaggattcattgatccggaaacatcaattgaaattg
aattgttgcatgttccaggaatcttgttgccacgtaatgatgttcatcacttttccgtgt
attacattaaatgtgatacggaggcccagtcttctggatggatagcaagtgttggatcag
cagctggatgggtttgggatggaatgaaagtgactggaagtgttttcaatgattatggaa
cgagtacaactagaaatacagtatgcacaactgcaactgtagcgggtggatttcttggag
gatggagtggtggagctattggcagcgctgttggaacactaattctaccgggtattggaa
cagcagttggttcatttcttggtggagcatcagctgcattagttgctggtaaagcaacaa
ttgtggtgactgatcgagttctcgatacaatcagttatgatattgaaacggtcagctgtg
agaagtgtggacgtggatttcgatgcaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGTTTGACATCAGGACTCCCAA 112 19 191 Antisense
TGTTCCAGGAATCTTGTTGCCACGT 422 563 261 Antisense
GATGTTCATCACTTTTCCGTGTATT 30 411 289 Antisense
GATACGGAGGCCCAGTCTTCTGGAT 460 423 325 Antisense
ATGCACAACTGCAACTGTAGCGGGT 201 43 453 Antisense
GTAGCGGGTGGATTTCTTGGAGGAT 482 457 469 Antisense
GGAGCTATTGGCAGCGCTGTTGGAA 322 521 502 Antisense
GGAACACTAATTCTACCGGGTATTG 392 519 523 Antisense
GGTGGAGCATCAGCTGCATTAGTTG 294 499 571 Antisense
TTGTGGTGACTGATCGAGTTCTCGA 207 707 611 Antisense
GTGGACGTGGATTTCGATGCAAGCT 117 491 677 Antisense
Sequence Source Affymetrix Proprietary Database