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[176095_at]

Description F09G8.3 /REP_DB=WormBase Gene ID /WP=CE24890 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 66      6grp_total > 24      4grp_total > 48      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1192
1 2 3 4 range
A 1490.1
(-3)
P 		1651.3
(-2)
P 		2487.6
(3)
P 		1554.5
(-2.6)
P 		998
B 1371.5
(-2.6)
P 		1769.1
(1)
P 		1991.5
(3)
P 		1325.4
(-3)
P 		666
C 1296
(-3)
P 		1779.8
(1)
P 		2030.4
(3)
P 		1400.7
(-2.1)
P 		734
avr 1385.9
(-3) 		1733.4
(-0.3) 		2169.8
(3) 		1426.9
(-2.7) 		784

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 1763.9
(3)
P 		1333.7
(-1)
P 		1486.6
(0.4)
P 		1347.3
(-0.8)
P 		1277.2
(-1.5)
P 		1112.9
(-3)
P 		651
B 1614.7
(3)
P 		1450.1
(0.1)
P 		1566.9
(2.2)
P 		1554.8
(1.9)
P 		1276
(-3)
P 		1353.5
(-1.6)
P 		339
C 1191
(-1.1)
P 		1584.7
(3)
P 		1205.1
(-1)
P 		1246.2
(-0.6)
P 		1013.4
(-3)
P 		1236.8
(-0.7)
P 		571
avr 1523.2
(3) 		1456.2
(1.8) 		1419.5
(1.1) 		1382.8
(0.5) 		1188.9
(-3) 		1234.4
(-2.2) 		334
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 480
1 2 3 4 range
A 542.6
(1.5)
P 		358.4
(-1.1)
P 		650.3
(3)
P 		227.6
(-3)
P 		423
B 437.3
(2.2)
P 		436.9
(2.2)
P 		461.5
(3)
P 		282.4
(-3)
P 		179
C 429
(-0.5)
P 		511.7
(0.5)
P 		707.7
(3)
P 		236.2
(-3)
P 		472
avr 469.6
(0.7) 		435.7
(0.1) 		606.5
(3) 		248.7
(-3) 		358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 325.2
(-1.4)
P 		474.3
(3)
P 		323.7
(-1.4)
P 		341.7
(-0.9)
P 		385.4
(0.4)
P 		271
(-3)
P 		203
B 561.8
(3)
P 		482.7
(0.4)
P 		380.5
(-3)
P 		411.8
(-2)
P 		518.4
(1.6)
P 		504.7
(1.1)
P 		181
C 441.4
(1.9)
P 		483.5
(3)
P 		306.7
(-1.6)
P 		250.6
(-3)
P 		327.9
(-1)
P 		414
(1.2)
P 		233
avr 442.8
(1.5) 		480.2
(3) 		337
(-2.9) 		334.7
(-3) 		410.6
(0.1) 		396.6
(-0.4) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6204
Sequence Type Exemplar sequence
Representative Public ID F09G8.3 NCBI
Target Description F09G8.3 /REP_DB=WormBase Gene ID /WP=CE24890 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066414 NCBI Caenorhabditis elegans F09G8.3 (F09G8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000034513 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8265882:8267647:1 11/11 None
SNAP00000034502 ENSEMBL cdna:SNAP chromosome:CEL140:III:8265978:8267647:1 11/11 None
F09G8.3.2 ENSEMBL cdna:known chromosome:CEL140:III:8265976:8267647:1 gene:F09G8.3 11/11 None
F09G8.3.1 ENSEMBL cdna:known chromosome:CEL140:III:8265978:8267735:1 gene:F09G8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8265973-8267643(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G8.3
Entrez Gene 184267 Entrez gene
SwissProt P34388 EMBL-EBI
WormBase CE24890 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602795_AT similar to mitochondrial ribosomal protein S9 cfa
CANINE_2:CFA.14269.1.S1_A_AT similar to mitochondrial ribosomal protein S9 cfa
CANINE_2:CFA.14269.2.S1_AT similar to mitochondrial ribosomal protein S9 cfa
CANINE_2:CFAAFFX.4090.1.S1_S_AT similar to mitochondrial ribosomal protein S9 cfa
DROSOPHILA_2:1640142_AT mitochondrial ribosomal protein S9 dm
DROSGENOME1:142785_AT mitochondrial ribosomal protein S9 dm
CHICKEN:GGA.8050.1.S1_A_AT mitochondrial ribosomal protein S9 gga
HU35KSUBA:RC_AA147891_AT mitochondrial ribosomal protein S9 hs
U133_X3P:HS.265561.1.S1_3P_AT mitochondrial ribosomal protein S9 hs
HG-U133_PLUS_2:226749_AT mitochondrial ribosomal protein S9 hs
HG-U133B:226749_AT mitochondrial ribosomal protein S9 hs
HG-U95B:44551_AT mitochondrial ribosomal protein S9 hs
HG-U95C:64283_AT mitochondrial ribosomal protein S9 hs
HG-U95C:61665_AT Mitochondrial ribosomal protein S9 hs
HG-U95E:72145_AT Mitochondrial ribosomal protein S9 hs
HG-U95E:80212_AT Mitochondrial ribosomal protein S9 hs
HU35KSUBC:RC_AA156582_AT Mitochondrial ribosomal protein S9 hs
HU35KSUBC:RC_N48329_AT Mitochondrial ribosomal protein S9 hs
MOUSE430_2:1435843_X_AT mitochondrial ribosomal protein S9 mm
MOE430A:1435843_X_AT mitochondrial ribosomal protein S9 mm
MOUSE430A_2:1435843_X_AT mitochondrial ribosomal protein S9 mm
MOE430A:1448921_A_AT mitochondrial ribosomal protein S9 mm
MOUSE430A_2:1448921_A_AT mitochondrial ribosomal protein S9 mm
MOUSE430_2:1448921_A_AT mitochondrial ribosomal protein S9 mm
MOUSE430A_2:1439210_AT mitochondrial ribosomal protein S9 mm
MOUSE430_2:1439210_AT mitochondrial ribosomal protein S9 mm
MOE430A:1439210_AT mitochondrial ribosomal protein S9 mm
MG-U74BV2:162920_AT mitochondrial ribosomal protein S9 mm
MOE430A:1418034_AT mitochondrial ribosomal protein S9 mm
MOUSE430A_2:1418034_AT mitochondrial ribosomal protein S9 mm
MOUSE430_2:1418034_AT mitochondrial ribosomal protein S9 mm
MU19KSUBB:TC34635_AT Mitochondrial ribosomal protein S9, mRNA (cDNA clone IMAGE:4036755) mm
MU19KSUBB:TC34636_AT Mitochondrial ribosomal protein S9, mRNA (cDNA clone IMAGE:4036755) mm
RG-U34B:RC_AI009481_AT mitochondrial ribosomal protein S9 (predicted) rn
RAE230A:1373002_AT mitochondrial ribosomal protein S9 (predicted) rn
RAT230_2:1373002_AT mitochondrial ribosomal protein S9 (predicted) rn
RAE230B:1396142_AT mitochondrial ribosomal protein S9 (predicted) rn
RAT230_2:1396142_AT mitochondrial ribosomal protein S9 (predicted) rn
YEAST_2:1773657_AT Mitochondrial ribosomal protein of the small subunit Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498815 F09G8.3 [Caenorhabditis elegans] gb|AAK84520.1| Hypothetical protein F09G8.3 [Caenorhabditis elegans] sp|P34388|RT09_CAEEL Probable 40S ribosomal protein S9, mitochondrial precursor 0.0
blast CAE70179 Hypothetical protein CBG16652 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034513 1 21-39
Sequence
Target Sequence 
>C. ELEGANS:176095_AT
gagcatcttgcttcattaccaggatcagctattgaacaaaagtttttgatggaattcaga
gagccaatgaccgcttcaactggatccaaattgttcggtcctgcgattcctgaagtgcat
gtttgtgcagtgaccaacagaagatatgcagaagtgacaacacgatgtaaagatactcgt
gctacagttaaggtcacagacgcaggaaaaggaaaattcgatattgatggtctccaattg
cacgatttcaggcatcttcaagccagagagattcttcttgcaccaatgattgtcagtcag
tctctcggtcgatttgatgtaacagcgacaacttcatgtatttctaatactcttccagaa
gcaccaaacaaggcgccattaatgcgaagtggaggaatgagtgctctaccgcgtgctgtt
cgccatggaactgcactttgtgttgccgctttgcaaccagaagctatcgaaccactaaga
ttatctggacttctaacactggacccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATCTTGCTTCATTACCAGGAT 516 389 616 Antisense
GCCAATGACCGCTTCAACTGGATCC 130 277 678 Antisense
GGATCCAAATTGTTCGGTCCTGCGA 552 511 697 Antisense
GGTCCTGCGATTCCTGAAGTGCATG 210 503 712 Antisense
TGCACGATTTCAGGCATCTTCAAGC 416 577 854 Antisense
GCCAGAGAGATTCTTCTTGCACCAA 606 279 877 Antisense
TCAGTCAGTCTCTCGGTCGATTTGA 448 621 908 Antisense
CGTGCTGTTCGCCATGGAACTGCAC 480 245 1027 Antisense
TGGAACTGCACTTTGTGTTGCCGCT 328 547 1041 Antisense
GCAACCAGAAGCTATCGAACCACTA 279 321 1068 Antisense
TCTGGACTTCTAACACTGGACCCAC 28 607 1099 Antisense
Sequence Source Affymetrix Proprietary Database