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[176092_at]

Description Y65B4A.K /REP_DB=WormBase Gene ID /WP=CE22734 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 19.2
(-2.3)
A 		12
(-3)
A 		48.9
(0.7)
A 		71.9
(3)
A 		60
B 52.6
(-0.2)
A 		79.4
(2.7)
A 		26.8
(-3)
A 		81.9
(3)
P 		55
C 70.8
(1.9)
A 		81.6
(3)
A 		22.5
(-3)
A 		67.9
(1.6)
A 		59
avr 47.5
(-0.8) 		57.7
(0.6) 		32.7
(-3) 		73.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 15.6
(-1.4)
A 		12.9
(-1.9)
A 		41.2
(2.9)
A 		37
(2.2)
A 		6.5
(-3)
A 		41.7
(3)
A 		35
B 61.5
(2.6)
M 		18.9
(-2.3)
A 		65.3
(3)
A 		27.3
(-1.3)
A 		42.3
(0.4)
A 		12.7
(-3)
A 		53
C 37.7
(1.4)
A 		36.7
(1.3)
A 		10.8
(-3)
A 		47.1
(3)
A 		41.4
(2.1)
A 		40.7
(1.9)
A 		36
avr 38.3
(2.7) 		22.8
(-3) 		39.1
(3) 		37.1
(2.3) 		30.1
(-0.3) 		31.7
(0.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 7
(-0.4)
A 		2.6
(-3)
A 		12.8
(3)
A 		10.5
(1.6)
A 		10
B 16.8
(1.7)
A 		19.6
(3)
A 		6.2
(-3)
A 		17.5
(2.1)
P 		13
C 23.4
(3)
A 		23.5
(3)
A 		7.8
(-3)
A 		11.4
(-1.6)
A 		16
avr 15.7
(3) 		15.2
(2.6) 		8.9
(-3) 		13.1
(0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.9
(-2.3)
A 		4.6
(-1.1)
A 		9
(2.2)
A 		9.4
(2.5)
A 		2
(-3)
A 		10.1
(3)
A 		8
B 21.4
(3)
M 		6.3
(-2.5)
A 		15.9
(1)
A 		7.2
(-2.1)
A 		17.2
(1.5)
A 		4.8
(-3)
A 		17
C 14
(3)
A 		11.2
(1.5)
A 		2.7
(-3)
A 		9.5
(0.6)
A 		13.4
(2.7)
A 		13.6
(2.8)
A 		11
avr 12.8
(3) 		7.4
(-3) 		9.2
(-1) 		8.7
(-1.6) 		10.9
(0.9) 		9.5
(-0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18872
Sequence Type Exemplar sequence
Representative Public ID Y65B4A.K NCBI
Target Description Y65B4A.K /REP_DB=WormBase Gene ID /WP=CE22734 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y65B4A.K
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y65B4A.K Y65B4A.K /REP_DB=WormBase Gene ID /WP=CE22734 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:665840-666111(+) 84.21 100.0
Sequence
Target Sequence 
>C. ELEGANS:176092_AT
cctcactggaagccccagatgccaaaaaatctacctcggtctcttgcacaacccgaaatc
caacagaaatgcgatggcttgatgtcgcgatgaatgaatccattccggtggaggtcacga
atcgcggccagcgtctgctcggccaagtgaagacccgtcgccatgctgaacttgcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCACTGGAAGCCCCAGATGCCAA 107 269 32 Antisense
GATGCCAAAAAATCTACCTCGGTCT 337 415 49 Antisense
AAAAAATCTACCTCGGTCTCTTGCA 685 129 55 Antisense
TCGGTCTCTTGCACAACCCGAAATC 671 601 67 Antisense
TGCACAACCCGAAATCCAACAGAAA 293 577 76 Antisense
ATCCAACAGAAATGCGATGGCTTGA 567 39 89 Antisense
GATGGCTTGATGTCGCGATGAATGA 92 407 104 Antisense
ATGAATCCATTCCGGTGGAGGTCAC 51 45 125 Antisense
GCGTCTGCTCGGCCAAGTGAAGACC 143 293 162 Antisense
TGCTCGGCCAAGTGAAGACCCGTCG 699 559 167 Antisense
CCGTCGCCATGCTGAACTTGCGATC 423 265 186 Antisense
Sequence Source Affymetrix Proprietary Database