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[176090_at]

Description Y41D4B.M /REP_DB=WormBase Gene ID /WP=CE21860 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 46      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 53.9
(3)
A 		41
(1.2)
A 		10.4
(-3)
A 		46.8
(2)
A 		44
B 65.9
(2)
A 		73.3
(2.8)
A 		75.4
(3)
A 		19.5
(-3)
A 		56
C 18.7
(-3)
A 		74.1
(3)
A 		48.8
(0.3)
A 		58.2
(1.3)
A 		55
avr 46.2
(-1.7) 		62.8
(3) 		44.9
(-2) 		41.5
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 102.5
(3)
A 		47.9
(-0.4)
A 		60
(0.4)
A 		48.5
(-0.3)
A 		5.5
(-3)
A 		62.1
(0.5)
A 		97
B 38.6
(1.2)
A 		51.3
(2.9)
A 		37
(1)
A 		28.5
(-0.1)
A 		6.9
(-3)
A 		51.7
(3)
A 		45
C 57.9
(2.8)
P 		8.1
(-3)
A 		21.4
(-1.4)
A 		59.3
(3)
A 		15.1
(-2.2)
A 		52.3
(2.2)
A 		51
avr 66.3
(3) 		35.8
(-0.2) 		39.5
(0.2) 		45.4
(0.8) 		9.2
(-3) 		55.4
(1.9) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.6
(3)
A 		8.9
(-0.8)
A 		2.7
(-3)
A 		6.8
(-1.5)
A 		17
B 21
(3)
A 		18.1
(2)
A 		17.5
(1.8)
A 		4.2
(-3)
A 		17
C 6.2
(-3)
A 		21.3
(3)
A 		17
(1.3)
A 		9.8
(-1.6)
A 		15
avr 15.6
(2.7) 		16.1
(3) 		12.4
(0.6) 		6.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 18.9
(3)
A 		17
(2.3)
A 		13.1
(1)
A 		12.3
(0.7)
A 		1.7
(-3)
A 		15.1
(1.7)
A 		17
B 13.4
(0.9)
A 		17.1
(2.2)
A 		9
(-0.7)
A 		7.5
(-1.3)
A 		2.8
(-3)
A 		19.3
(3)
A 		17
C 21.5
(3)
P 		2.5
(-3)
A 		5.4
(-2.1)
A 		11.9
(-0)
A 		4.9
(-2.2)
A 		17.5
(1.7)
A 		19
avr 17.9
(3) 		12.2
(0.7) 		9.2
(-0.5) 		10.6
(0) 		3.1
(-3) 		17.3
(2.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19173
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.M NCBI
Target Description Y41D4B.M /REP_DB=WormBase Gene ID /WP=CE21860 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067700(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067700 NCBI Caenorhabditis elegans Y41D4B.15 (Y41D4B.15) mRNA, complete cds. 10/11 None
GENEFINDER00000005530 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1562231:1568800:1 10/11 None
Y41D4B.15 ENSEMBL cdna:known chromosome:CEL140:IV:1564455:1565707:1 gene:Y41D4B.15 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005509 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1564460-1565713(+) 55.81 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.15
Entrez Gene 189822 Entrez gene
SwissProt Q95Y16 EMBL-EBI
WormBase CE32526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68466 Hypothetical protein Y41D4B.16 [Caenorhabditis elegans] ref|NP_500100.1| Y41D4B.16 [Caenorhabditis elegans] 0.0
blast CAE67962 Hypothetical protein CBG13566 [Caenorhabditis briggsae] 7.0E-94
blast AAK68465 Hypothetical protein Y41D4B.15 [Caenorhabditis elegans] ref|NP_500101.2| Y41D4B.15 [Caenorhabditis elegans] 4.0E-85
blast AAK68465 Hypothetical protein Y41D4B.15 [Caenorhabditis elegans] ref|NP_500101.2| Y41D4B.15 [Caenorhabditis elegans] 2.0E-65
blast CAE74259 Hypothetical protein CBG21949 [Caenorhabditis briggsae] 2.0E-13
blast AAC04391 Hypothetical protein C34H4.2 [Caenorhabditis elegans] ref|NP_500096.2| C34H4.2 [Caenorhabditis elegans] 8.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.1E-17
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 5.3E-31
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.8E-21
Sequence
Target Sequence 
>C. ELEGANS:176090_AT
ttgtcgccagtccgtcatagaaaaattaggaaaaaatcactttcagacccgaatttcttg
gtctattcagtagatcaacggcggaacatatcctctgaccgagatgacttgactttggtg
tttttgaatcaagacctcaaaatgcaaaactctcagctttacgtgcccgaaatgtcttct
cgagtttcaggactcgaaacttctgcgacatccagcgtctcgatctactggaatacgccc
actgagaactacaaggaccccgattcagatgatagcagccaacaacgaatcttctcgaat
ccgttgcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCGCCAGTCCGTCATAGAAAAA 417 707 505 Antisense
AATCACTTTCAGACCCGAATTTCTT 486 165 539 Antisense
ACGGCGGAACATATCCTCTGACCGA 35 97 582 Antisense
GCAAAACTCTCAGCTTTACGTGCCC 405 317 648 Antisense
ACGTGCCCGAAATGTCTTCTCGAGT 258 93 665 Antisense
GGACTCGAAACTTCTGCGACATCCA 94 525 694 Antisense
ACATCCAGCGTCTCGATCTACTGGA 706 103 712 Antisense
GGAATACGCCCACTGAGAACTACAA 434 533 734 Antisense
GAACTACAAGGACCCCGATTCAGAT 571 345 750 Antisense
ATAGCAGCCAACAACGAATCTTCTC 113 23 776 Antisense
GAATCTTCTCGAATCCGTTGCAAAT 634 327 791 Antisense
Sequence Source Affymetrix Proprietary Database