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[176087_at]

Description C07H6.2 /REP_DB=WormBase Gene ID /WP=CE00756 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 84      6grp_total > 58      4grp_total > 10      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 483.6
(-3)
P 		556.6
(-1.9)
P 		524.8
(-2.4)
P 		879.3
(3)
P 		396
B 501.9
(-2.6)
P 		473.2
(-3)
P 		578.1
(-1.5)
P 		893.5
(3)
P 		420
C 547.1
(-1.4)
P 		572.8
(-0.9)
P 		456
(-3)
P 		794.2
(3)
P 		338
avr 510.9
(-3) 		534.2
(-2.6) 		519.6
(-2.8) 		855.7
(3) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 705.1
(3)
P 		533.9
(-3)
P 		606.1
(-0.5)
P 		610.5
(-0.3)
P 		559.8
(-2.1)
P 		575.4
(-1.5)
P 		171
B 628.2
(-0.6)
P 		595.6
(-1.5)
P 		596.3
(-1.5)
P 		546.1
(-3)
P 		612
(-1)
P 		748.2
(3)
P 		202
C 599.4
(-1.1)
P 		568.4
(-1.9)
P 		538.5
(-2.8)
P 		598
(-1.1)
P 		530.5
(-3)
P 		745.5
(3)
P 		215
avr 644.2
(0.8) 		566
(-3) 		580.3
(-2.3) 		584.9
(-2.1) 		567.4
(-2.9) 		689.7
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 176.1
(3)
P 		120.8
(-3)
P 		137.2
(-1.2)
P 		128.7
(-2.1)
P 		55
B 160.1
(0.5)
P 		116.9
(-3)
P 		134
(-1.6)
P 		190.4
(3)
P 		74
C 181.1
(3)
P 		164.7
(0.9)
P 		158.9
(0.2)
P 		133.9
(-3)
P 		47
avr 172.4
(3) 		134.1
(-3) 		143.4
(-1.5) 		151
(-0.4) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 130
(-3)
P 		189.9
(3)
P 		132
(-2.8)
P 		154.8
(-0.5)
P 		168.9
(0.9)
P 		140.1
(-2)
P 		60
B 218.6
(0.3)
P 		198.3
(-0.6)
P 		144.8
(-3)
P 		144.6
(-3)
P 		248.6
(1.6)
P 		279
(3)
P 		134
C 222.2
(1.7)
P 		173.4
(-0.5)
P 		137
(-2.2)
P 		120.3
(-3)
P 		171.7
(-0.6)
P 		249.5
(3)
P 		129
avr 190.3
(0.7) 		187.2
(0.5) 		137.9
(-3) 		139.9
(-2.9) 		196.4
(1.1) 		222.9
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7986
Sequence Type Exemplar sequence
Representative Public ID C07H6.2 NCBI
Target Description C07H6.2 /REP_DB=WormBase Gene ID /WP=CE00756 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066251 NCBI Caenorhabditis elegans C07H6.2 (C07H6.2) mRNA, complete cds. 11/11 None
SNAP00000039493 ENSEMBL cdna:SNAP chromosome:CEL140:III:7515797:7521251:1 11/11 None
GENEFINDER00000039505 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7520928:7521251:1 11/11 None
C07H6.2 ENSEMBL cdna:known chromosome:CEL140:III:7520928:7521251:1 gene:C07H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7520925-7521249(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07H6.2
Entrez Gene 182382 Entrez gene
SwissProt Q95YE7 EMBL-EBI
WormBase CE00756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85440 Hypothetical protein C07H6.2 [Caenorhabditis elegans] ref|NP_498652.1| C07H6.2 [Caenorhabditis elegans] 8.0E-34
blast CAE64456 Hypothetical protein CBG09169 [Caenorhabditis briggsae] 5.0E-17
Sequence
Target Sequence 
>C. ELEGANS:176087_AT
gccacactcaacaacaaactgcttcaagcactgaaacctctactgtcaccgttcctccat
ctcgagaacagaacttggtgcttcatcttagtccaaatccagctcagccatcaacttcag
aacggcgacacgtagtttgggccaccgaaacagtggataacgaaggaatgggcaagaaga
agagcaaatgctgttgtatctacaagaagcccaaaaattggcaagactcaagctcggatt
ctgattcggattgtgaaaccggtcattgtcgtggccacgtcgagcacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACACTCAACAACAAACTGCTTC 87 279 17 Antisense
TGCTTCAAGCACTGAAACCTCTACT 189 579 36 Antisense
CCGTTCCTCCATCTCGAGAACAGAA 107 265 65 Antisense
AGAACTTGGTGCTTCATCTTAGTCC 615 73 86 Antisense
TCATCTTAGTCCAAATCCAGCTCAG 348 621 99 Antisense
CAGCCATCAACTTCAGAACGGCGAC 298 203 121 Antisense
GAACGGCGACACGTAGTTTGGGCCA 43 349 136 Antisense
CGTAGTTTGGGCCACCGAAACAGTG 96 1 147 Antisense
GGCAAGACTCAAGCTCGGATTCTGA 667 533 236 Antisense
TGTGAAACCGGTCATTGTCGTGGCC 49 551 268 Antisense
TTGTCGTGGCCACGTCGAGCACAAA 418 707 282 Antisense
Sequence Source Affymetrix Proprietary Database