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[176086_at]

Description Y41D4B.X /REP_DB=WormBase Gene ID /WP=CE26098 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 65      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 53.4
(0.9)
A 		23
(-3)
A 		31.8
(-1.9)
A 		69.9
(3)
A 		47
B 41.2
(3)
A 		39.7
(2.7)
A 		9.8
(-3)
A 		39.3
(2.6)
A 		31
C 34.6
(0)
A 		43.9
(3)
A 		25.3
(-3)
A 		40.4
(1.9)
A 		19
avr 43.1
(1.5) 		35.5
(-0.1) 		22.3
(-3) 		49.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 7.2
(-3)
A 		14.4
(-2.2)
A 		43.2
(1.2)
A 		17.1
(-1.8)
A 		37.5
(0.6)
A 		58.4
(3)
A 		51
B 31.9
(-0.8)
A 		54.2
(3)
A 		19
(-3)
A 		26.1
(-1.8)
A 		30.9
(-1)
A 		33.1
(-0.6)
A 		35
C 54.8
(0.1)
A 		39.7
(-2.3)
A 		56.9
(0.5)
A 		72.8
(3)
A 		35.3
(-3)
A 		51.3
(-0.4)
A 		38
avr 31.3
(-3) 		36.1
(-1.2) 		39.7
(0.1) 		38.7
(-0.3) 		34.6
(-1.8) 		47.6
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.4
(3)
A 		5
(-3)
A 		8.3
(-1.6)
A 		10.2
(-0.8)
A 		14
B 13.2
(3)
A 		9.8
(1.1)
A 		2.3
(-3)
A 		8.4
(0.4)
A 		11
C 11.4
(1.8)
A 		12.6
(3)
A 		8.8
(-0.9)
A 		6.8
(-3)
A 		6
avr 14.7
(3) 		9.1
(-1.1) 		6.5
(-3) 		8.5
(-1.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.3
(-3)
A 		5.1
(-1.2)
A 		9.4
(0.8)
A 		4.3
(-1.6)
A 		11.3
(1.7)
A 		14.2
(3)
A 		13
B 11.1
(-0.1)
A 		18.1
(3)
A 		4.6
(-3)
A 		6.9
(-2)
A 		12.6
(0.6)
A 		12.4
(0.5)
A 		14
C 20.3
(3)
A 		12.1
(-2.5)
A 		14.5
(-0.9)
A 		14.6
(-0.8)
A 		11.4
(-3)
A 		17.2
(0.9)
A 		9
avr 10.9
(-0.7) 		11.8
(0.2) 		9.5
(-2.1) 		8.6
(-3) 		11.8
(0.2) 		14.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19209
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.X NCBI
Target Description Y41D4B.X /REP_DB=WormBase Gene ID /WP=CE26098 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067715 NCBI Caenorhabditis elegans Y41D4B.4 (Y41D4B.4) mRNA, complete cds. 11/11 A 
SNAP00000005524 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1660706:1672173:1 11/11 None
GENEFINDER00000005537 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1660113:1665123:1 11/11 None
Y41D4B.4 ENSEMBL cdna:known chromosome:CEL140:IV:1660110:1669681:1 gene:Y41D4B.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1660511-1664558(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.4
Entrez Gene 176976 Entrez gene
SwissProt Q8WSN7 EMBL-EBI
WormBase CE37566 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68478 Hypothetical protein Y41D4B.4 [Caenorhabditis elegans] ref|NP_500116.3| Y41D4B.4 [Caenorhabditis elegans] 0.0
blast CAE67975 Hypothetical protein CBG13581 [Caenorhabditis briggsae] 1.0E-142
blast CAE67975 Hypothetical protein CBG13581 [Caenorhabditis briggsae] 1.0E-75
Sequence
Target Sequence 
>C. ELEGANS:176086_AT
tcactggtaccgaacgcaacgacgtgtactggtggctgaaatcggctgaagccgtcggca
attaccgaatctacgatgcgattgcttgtctcaaacgaatgtcacatcagaatccacgtg
tgctcaccgaaatggctcggcttaactatcaaatcgataaaaaagacgaagcgaggcggc
tattacgtaccgcgcataataacgacagcctctggatagacggaatggatcttctcgcgt
ttttgtgcattggggatttcacccaacacgccgcactaatcgagaatctagcgaccacat
tgaatcgagaatggccacatcgtgcggaaacatgcacagttaatggatttatggctcagc
aaattgacacggagctcgcgtggagttttgcggaacgagccaggaaaatggtgtttccgg
gcactgaacaatacgtttttgccgtccatttgcgcgcctatgtgctcagaacgatggagt
tgaagtcgcgaggagccgatgtggaaagatatcggaaccaagcgcaccgtattcttcttg
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTGGTACCGAACGCAACGACGT 627 611 503 Antisense
GCAACGACGTGTACTGGTGGCTGAA 265 321 518 Antisense
TCTACGATGCGATTGCTTGTCTCAA 270 615 572 Antisense
GAGGCGGCTATTACGTACCGCGCAT 553 405 675 Antisense
ACCGCGCATAATAACGACAGCCTCT 512 89 691 Antisense
ATCTTCTCGCGTTTTTGTGCATTGG 449 31 731 Antisense
AACACGCCGCACTAATCGAGAATCT 645 135 767 Antisense
GGAGCTCGCGTGGAGTTTTGCGGAA 592 521 873 Antisense
CAATACGTTTTTGCCGTCCATTTGC 585 179 931 Antisense
GCGCCTATGTGCTCAGAACGATGGA 707 287 956 Antisense
CCAAGCGCACCGTATTCTTCTTGAA 165 277 1020 Antisense
Sequence Source Affymetrix Proprietary Database