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[176085_at]

Description F10E9.3 /REP_DB=WormBase Gene ID /WP=CE00147 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 78      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 95      6grp_total > 69      4grp_total > 08      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 956
1 2 3 4 range
A 401
(-3)
P 		530.6
(-2)
P 		610.1
(-1.4)
P 		1207.2
(3)
P 		806
B 409
(-3)
P 		466.3
(-2.6)
P 		723.5
(-1)
P 		1357.1
(3)
P 		948
C 507.6
(-2.7)
P 		470.9
(-3)
P 		583.9
(-2.1)
P 		1210.8
(3)
P 		740
avr 439.2
(-3) 		489.3
(-2.6) 		639.2
(-1.5) 		1258.4
(3) 		819

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 769
1 2 3 4 5 6 range
A 894
(0.5)
P 		721.8
(-0.8)
P 		444.8
(-3)
P 		610.5
(-1.7)
P 		733
(-0.7)
P 		1208.3
(3)
P 		764
B 647.1
(-1.4)
P 		579.2
(-2.3)
P 		528.3
(-3)
P 		541.2
(-2.8)
P 		714.6
(-0.5)
P 		984.1
(3)
P 		456
C 718.2
(0.1)
P 		439.4
(-3)
P 		600.2
(-1.2)
P 		781.6
(0.8)
P 		636.6
(-0.8)
P 		976
(3)
P 		537
avr 753.1
(-0.4) 		580.1
(-2.4) 		524.4
(-3) 		644.4
(-1.6) 		694.7
(-1.1) 		1056.1
(3) 		532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 146
(0)
P 		115.2
(-3)
P 		159.5
(1.3)
P 		176.7
(3)
P 		62
B 130.4
(-2.5)
P 		115.2
(-3)
P 		167.7
(-1.2)
P 		289.2
(3)
P 		174
C 168
(-0.2)
P 		135.4
(-3)
P 		203.5
(2.9)
P 		204.2
(3)
P 		69
avr 148.1
(-1.5) 		121.9
(-3) 		176.9
(0.3) 		223.4
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 164.8
(-0.9)
P 		256.7
(1.9)
P 		96.9
(-3)
P 		154.8
(-1.2)
P 		221.2
(0.8)
P 		294.2
(3)
P 		197
B 225.2
(-0.6)
P 		192.8
(-1.4)
P 		128.3
(-3)
P 		143.4
(-2.6)
P 		290.3
(1.1)
P 		366.9
(3)
P 		239
C 266.2
(1.1)
P 		134.1
(-3)
P 		152.8
(-2.4)
P 		157.2
(-2.3)
P 		206
(-0.8)
P 		326.7
(3)
P 		193
avr 218.7
(-0.3) 		194.5
(-1) 		126
(-3) 		151.8
(-2.2) 		239.2
(0.3) 		329.3
(3) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7544
Sequence Type Exemplar sequence
Representative Public ID F10E9.3 NCBI
Target Description F10E9.3 /REP_DB=WormBase Gene ID /WP=CE00147 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066425 NCBI Caenorhabditis elegans F10E9.3 (F10E9.3) mRNA, complete cds. 11/11 None
SNAP00000040908 ENSEMBL cdna:SNAP chromosome:CEL140:III:8310923:8312300:1 11/11 None
GENEFINDER00000040919 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8310923:8312300:1 11/11 None
F10E9.3 ENSEMBL cdna:known chromosome:CEL140:III:8310920:8312487:1 gene:F10E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8310272-8312296(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E9.3
Entrez Gene 176170 Entrez gene
SwissProt P34397 EMBL-EBI
WormBase CE29959 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28014 Hypothetical protein F10E9.3 [Caenorhabditis elegans] ref|NP_498826.2| F10E9.3 [Caenorhabditis elegans] sp|P34397|YLU3_CAEEL Hypothetical protein F10E9.3 in chromosome III 1.0E-158
blast CAE70168 Hypothetical protein CBG16638 [Caenorhabditis briggsae] 1.0E-56
blast CAE63424 Hypothetical protein CBG07868 [Caenorhabditis briggsae] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:176085_AT
ggatcaccttcagttgggattcgcaagtatggggtcccaccgccgatgcctcgatctctt
cgtaatattgcgggaagcataaatgttgttgggtcaaattcgtcgctcgggcctgccaga
cttcttgaaagccgaaaaagacatttcgataaggataaagatgggaagaacccgaaaaga
tcttcactggtagcctacaatggggggagagccggtgaaaacttccgaaaagtgccgcct
tccgcagtgtcaccagctccaggatcaggttcatctgcatcttctggaacatcaacttca
tcgtccaatggtataatagatgtgcaatcaatgctccgtgatcagtcgccagtcagaatg
caagtgatggttggaggggatcacgaaactaatggagattcaattcaagaagctatggaa
ttggctaatgctcaaaaggaaagcataggaaatattgcaagagcatccagccatcacaat
atgcttcttggttcgatgattattaatggtctcaacactctacaatctcgggataaggat
gaatacactaatttctcatcagacctcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCACCTTCAGTTGGGATTCGCA 526 511 631 Antisense
GGATTCGCAAGTATGGGGTCCCACC 211 507 647 Antisense
GATGCCTCGATCTCTTCGTAATATT 14 415 675 Antisense
GGGCCTGCCAGACTTCTTGAAAGCC 314 491 739 Antisense
GAAAAGATCTTCACTGGTAGCCTAC 139 355 804 Antisense
GCTCCAGGATCAGGTTCATCTGCAT 217 299 886 Antisense
GATGTGCAATCAATGCTCCGTGATC 469 407 949 Antisense
CCGTGATCAGTCGCCAGTCAGAATG 323 265 966 Antisense
ATTGCAAGAGCATCCAGCCATCACA 708 5 1084 Antisense
AATGGTCTCAACACTCTACAATCTC 316 163 1135 Antisense
CACTAATTTCTCATCAGACCTCTTT 214 197 1176 Antisense
Sequence Source Affymetrix Proprietary Database