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[176083_s_at]

Description C07H6.8 /REP_DB=WormBase Gene ID /WP=CE26359 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      6grp_highest_nonorm > 90      6grp_total > 57      4grp_total > 15      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 230.5
(3)
P 		125.7
(-2.3)
M 		112.6
(-3)
M 		228.1
(2.9)
P 		118
B 220.5
(3)
P 		133.4
(-2.6)
A 		127.2
(-3)
P 		179.6
(0.4)
P 		93
C 244.1
(2.7)
P 		87.1
(-3)
A 		162.3
(-0.3)
P 		253.3
(3)
P 		166
avr 231.7
(3) 		115.4
(-3) 		134
(-2) 		220.3
(2.4) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 161.4
(1.1)
P 		164.3
(1.3)
P 		176
(2.3)
P 		184.6
(3)
P 		110.8
(-3)
P 		166.7
(1.5)
P 		74
B 143.8
(-1.6)
P 		118.1
(-2.4)
P 		130.9
(-2)
P 		135.6
(-1.8)
P 		97.7
(-3)
P 		290.3
(3)
P 		193
C 180.9
(-0.3)
P 		186.9
(-0.1)
P 		107.6
(-3)
P 		182.9
(-0.2)
P 		131.3
(-2.1)
P 		268.9
(3)
P 		161
avr 162
(-0.7) 		156.4
(-1) 		138.2
(-1.8) 		167.7
(-0.5) 		113.3
(-3) 		242
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 83.9
(3)
P 		27.3
(-3)
M 		29.4
(-2.8)
M 		33.4
(-2.4)
P 		57
B 70.3
(3)
P 		32.9
(-2.5)
A 		29.5
(-3)
P 		38.3
(-1.7)
P 		41
C 80.8
(3)
P 		25
(-3)
A 		56.6
(0.4)
P 		42.7
(-1.1)
P 		56
avr 78.3
(3) 		28.4
(-3) 		38.5
(-1.8) 		38.1
(-1.8) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 29.8
(-3)
P 		58.4
(3)
P 		38.3
(-1.2)
P 		46.8
(0.6)
P 		33.4
(-2.2)
P 		40.6
(-0.7)
P 		29
B 50
(-1.6)
P 		39.3
(-2.4)
P 		31.8
(-3)
P 		35.9
(-2.7)
P 		39.7
(-2.4)
P 		108.3
(3)
P 		77
C 67
(0.8)
P 		57
(-0.2)
P 		27.4
(-3)
P 		36.8
(-2.1)
P 		42.5
(-1.6)
P 		90
(3)
P 		63
avr 48.9
(-0.9) 		51.6
(-0.6) 		32.5
(-3) 		39.8
(-2.1) 		38.5
(-2.2) 		79.6
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176083_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7887
Sequence Type Exemplar sequence
Representative Public ID C07H6.8 NCBI
Target Description C07H6.8 /REP_DB=WormBase Gene ID /WP=CE26359 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066250 NCBI Caenorhabditis elegans Clk-2 Upstream, human gene XE7 related family member (cux-7) (cux-7) mRNA, complete cds. 11/11 None
SNAP00000039494 ENSEMBL cdna:SNAP chromosome:CEL140:III:7518657:7520616:-1 11/11 None
GENEFINDER00000039499 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7518657:7520616:-1 11/11 None
C07H6.8 ENSEMBL cdna:known chromosome:CEL140:III:7518559:7520724:-1 gene:C07H6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7518654-7520614(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cux-7
Ensembl C07H6.8
Entrez Gene 176066 Entrez gene
SwissProt Q95YE8 EMBL-EBI
WormBase CE30241 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17268.1.S1_AT similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1 cfa
DROSOPHILA_2:1632858_A_AT dm
DROSGENOME1:155114_AT dm
CHICKEN:GGA.12225.1.S1_AT similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1; Pseudoautosomal gene XE7 (Y chromosome) gga
CHICKEN:GGA.12225.2.S1_A_AT similar to DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1; Pseudoautosomal gene XE7 (Y chromosome) gga
HG-U133A_2:203624_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U133_PLUS_2:203624_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-FOCUS:203624_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U133A:203624_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U133_PLUS_2:210269_S_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U133A:210269_S_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U133A_2:210269_S_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HU35KSUBA:M99578_S_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HU35KSUBD:RC_AA481996_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
U133_X3P:G187241_3P_S_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
U133_X3P:G10835221_3P_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
U133_X3P:HS.123127.0.A1_3P_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U133_PLUS_2:228447_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U133B:228447_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U95AV2:34172_S_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U95AV2:34215_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U95B:57581_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U95D:89928_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HG-U95C:60058_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
HU35KSUBC:RC_AA280011_AT DNA segment on chromosome X and Y (unique) 155 expressed sequence hs
Protein Similarities
Method ID Description E-Value
blast AAK85446 Clk-2 upstream, human gene xe7 related protein 7 [Caenorhabditis elegans] ref|NP_498651.2| Clk-2 Upstream, human gene XE7 related family member (cux-7) [Caenorhabditis elegans] 0.0
blast AAL28025 CUX-7 [Caenorhabditis elegans] 0.0
blast CAE64457 Hypothetical protein CBG09170 [Caenorhabditis briggsae] 1.0E-165
Sequence
Target Sequence 
>C. ELEGANS:176083_S_AT
gatagagaacggaaacgccgcgaaaagagggaactcgaacgaatggctgaagaagagaaa
aaacgccttgaaaaggaacgacttgaagcagagcaacgatcacgagccactcgccgtttg
caaggtgttcgtcttttgaagtttctgtttgaaaaaattgaagcacgagaagagagacga
aagagaaaagaagaagaaaagttgaaagatgagctgagcaaaatcaaagaacttgaagaa
caacctgtagaacaagaagacgcattgaggcaagctctacttcagcagagggaaattcga
atgcgagaacgcttgaaagagaagatgaaagcttcaggagcagagaaggataagaagaga
gataaaaataagacttctagaagaagacgaactaatagacatgacacttcatcctcttca
tccgaagattctgattctccatctgattctccccactctcgtcgacaaagaaaacgtcaa
agtgaaggagatgatttccggagacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAGAGAACGGAAACGCCGCGAAA 277 423 820 Antisense
GAGGGAACTCGAACGAATGGCTGAA 12 403 846 Antisense
AGGAACGACTTGAAGCAGAGCAACG 165 55 893 Antisense
GCAGAGCAACGATCACGAGCCACTC 369 313 907 Antisense
CACTCGCCGTTTGCAAGGTGTTCGT 301 197 927 Antisense
GTTCGTCTTTTGAAGTTTCTGTTTG 38 443 946 Antisense
GAAGACGCATTGAGGCAAGCTCTAC 387 339 1075 Antisense
GGCAAGCTCTACTTCAGCAGAGGGA 532 533 1088 Antisense
CATCCGAAGATTCTGATTCTCCATC 7 213 1238 Antisense
TCCCCACTCTCGTCGACAAAGAAAA 613 595 1269 Antisense
GAAGGAGATGATTTCCGGAGACATC 620 333 1303 Antisense
Sequence Source Affymetrix Proprietary Database