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[176082_s_at]

Description Y41D4B.V /REP_DB=WormBase Gene ID /WP=CE21851 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 57      4grp_total > 10      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 5.7
(-3)
A 		23.6
(-0.7)
A 		13.2
(-2)
A 		52.1
(3)
A 		46
B 16.7
(-1.1)
A 		8.2
(-2.3)
A 		2.7
(-3)
A 		46.7
(3)
A 		44
C 3.6
(-2.9)
A 		5.5
(-2.8)
A 		2.9
(-3)
A 		67.5
(3)
P 		65
avr 8.7
(-2.7) 		12.4
(-2.3) 		6.3
(-3) 		55.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 34.2
(0.8)
A 		3.1
(-2.9)
A 		2.5
(-3)
A 		10.6
(-2)
A 		4.8
(-2.7)
A 		53
(3)
P 		51
B 15.8
(-1.6)
A 		15.9
(-1.6)
A 		8.7
(-2.6)
A 		5.5
(-3)
A 		9.8
(-2.4)
A 		49.5
(3)
M 		44
C 4.8
(-3)
A 		15.8
(-1.7)
A 		19.4
(-1.2)
A 		13.1
(-2)
A 		4.7
(-3)
A 		54.5
(3)
P 		50
avr 18.3
(-1.4) 		11.6
(-2.3) 		10.2
(-2.5) 		9.7
(-2.6) 		6.4
(-3) 		52.3
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-3)
A 		5.1
(0.3)
A 		3.5
(-1.5)
A 		7.6
(3)
A 		6
B 5.3
(-0)
A 		2
(-2.1)
A 		0.6
(-3)
A 		10
(3)
A 		9
C 1.2
(-2.9)
A 		1.6
(-2.7)
A 		1
(-3)
A 		11.4
(3)
P 		10
avr 2.9
(-2.1) 		2.9
(-2.1) 		1.7
(-3) 		9.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.3
(-0.2)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		2.7
(-2)
A 		1.5
(-2.6)
A 		12.9
(3)
P 		12
B 5.5
(-1.6)
A 		5.3
(-1.7)
A 		2.1
(-2.8)
A 		1.5
(-3)
A 		4
(-2.1)
A 		18.5
(3)
M 		17
C 1.8
(-2.9)
A 		4.8
(-1.8)
A 		4.9
(-1.8)
A 		2.6
(-2.6)
A 		1.5
(-3)
A 		18.3
(3)
P 		17
avr 4.5
(-2.1) 		3.7
(-2.4) 		2.5
(-2.9) 		2.3
(-3) 		2.3
(-3) 		16.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176082_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19167
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.V NCBI
Target Description Y41D4B.V /REP_DB=WormBase Gene ID /WP=CE21851 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067712 NCBI Caenorhabditis elegans Y41D4B.6 (Y41D4B.6) mRNA, complete cds. 11/11 A 
SNAP00000005521 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1636052:1637365:1 11/11 None
GENEFINDER00000005526 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1633798:1637365:1 11/11 None
Y41D4B.6 ENSEMBL cdna:known chromosome:CEL140:IV:1633770:1637365:1 gene:Y41D4B.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1633803-1637371(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.6
Entrez Gene 176974 Entrez gene
WormBase CE39048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68480 Hypothetical protein Y41D4B.6 [Caenorhabditis elegans] ref|NP_500113.1| Y41D4B.6 [Caenorhabditis elegans] 1.0E-179
blast AAK68480 Hypothetical protein Y41D4B.6 [Caenorhabditis elegans] ref|NP_500113.1| Y41D4B.6 [Caenorhabditis elegans] 1.0E-151
blast AAK68480 Hypothetical protein Y41D4B.6 [Caenorhabditis elegans] ref|NP_500113.1| Y41D4B.6 [Caenorhabditis elegans] 2.0E-47
blast CAE67972 Hypothetical protein CBG13578 [Caenorhabditis briggsae] 4.0E-33
blast AAL32241 Hypothetical protein Y41D4B.26 [Caenorhabditis elegans] ref|NP_741322.2| Y41D4B.26 [Caenorhabditis elegans] 7.0E-17
blast AAL32241 Hypothetical protein Y41D4B.26 [Caenorhabditis elegans] ref|NP_741322.2| Y41D4B.26 [Caenorhabditis elegans] 8.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500113.1 1 7-26
Y41D4B.6 1 7-26
GENEFINDER00000005526 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:176082_S_AT
ggaacagaacgtaaatctcaaccaatttcattctccatggatgatgggccttcgattcca
ggacttccgggaatgttctctccattcggaatgctcagctcaatgatgtcccgtttccca
agaagcactactcagcaaaaatcagaattttctggaatcaccgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAGAACGTAAATCTCAACCAA 156 529 835 Antisense
AATCTCAACCAATTTCATTCTCCAT 532 169 848 Antisense
CATTCTCCATGGATGATGGGCCTTC 193 217 863 Antisense
TGGATGATGGGCCTTCGATTCCAGG 106 551 872 Antisense
AGGACTTCCGGGAATGTTCTCTCCA 405 55 894 Antisense
TTCCGGGAATGTTCTCTCCATTCGG 522 697 899 Antisense
CTCCATTCGGAATGCTCAGCTCAAT 113 235 914 Antisense
AATGCTCAGCTCAATGATGTCCCGT 188 167 924 Antisense
GTTTCCCAAGAAGCACTACTCAGCA 26 451 947 Antisense
GAAGCACTACTCAGCAAAAATCAGA 495 341 956 Antisense
CAGAATTTTCTGGAATCACCGCCGA 234 205 977 Antisense
Sequence Source Affymetrix Proprietary Database