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[176081_at]

Description Y41D4B.V /REP_DB=WormBase Gene ID /WP=CE21851 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 13.7
(0.4)
A 		7.7
(-3)
A 		18.3
(3)
A 		16.9
(2.2)
A 		11
B 6.6
(-3)
A 		6.4
(-3)
A 		10.9
(-2.4)
A 		52.7
(3)
A 		46
C 8.4
(-2.2)
A 		12.5
(-1.5)
A 		3.3
(-3)
A 		40.6
(3)
A 		37
avr 9.6
(-2.8) 		8.9
(-3) 		10.8
(-2.6) 		36.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 13.3
(-2.2)
A 		33.7
(0)
A 		5.8
(-3)
A 		6.6
(-2.9)
A 		9
(-2.7)
A 		60.7
(3)
A 		55
B 7.8
(-2.9)
A 		9.8
(-2.8)
A 		9.2
(-2.8)
A 		7
(-3)
A 		20.3
(-2)
A 		83.5
(3)
A 		77
C 11.1
(-2.5)
A 		11.4
(-2.5)
A 		7.1
(-2.8)
A 		13.3
(-2.3)
A 		4.6
(-3)
A 		79.5
(3)
M 		75
avr 10.7
(-2.7) 		18.3
(-2) 		7.4
(-3) 		9
(-2.9) 		11.3
(-2.7) 		74.6
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5
(3)
A 		1.7
(-3)
A 		4.8
(2.6)
A 		2.5
(-1.5)
A 		3
B 2.1
(-2.7)
A 		1.6
(-3)
A 		2.5
(-2.4)
A 		11.2
(3)
A 		10
C 2.8
(-1.2)
A 		3.6
(-0.4)
A 		1.1
(-3)
A 		6.8
(3)
A 		6
avr 3.3
(-1.7) 		2.3
(-3) 		2.8
(-2.3) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.5
(-2.5)
A 		12
(1.8)
A 		1.3
(-3)
A 		1.7
(-2.8)
A 		2.7
(-2.4)
A 		14.8
(3)
A 		14
B 2.7
(-2.8)
A 		3.3
(-2.7)
A 		2.2
(-2.9)
A 		1.9
(-3)
A 		8.2
(-1.7)
A 		31.1
(3)
A 		29
C 4.1
(-2.4)
A 		3.5
(-2.5)
A 		1.8
(-2.9)
A 		2.7
(-2.7)
A 		1.5
(-3)
A 		26.6
(3)
M 		25
avr 3.1
(-2.7) 		6.3
(-1.8) 		1.8
(-3) 		2.1
(-2.9) 		4.1
(-2.4) 		24.2
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19167
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.V NCBI
Target Description Y41D4B.V /REP_DB=WormBase Gene ID /WP=CE21851 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067712 NCBI Caenorhabditis elegans Y41D4B.6 (Y41D4B.6) mRNA, complete cds. 11/11 A 
SNAP00000005520 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1634384:1635334:1 11/11 None
GENEFINDER00000005526 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1633798:1637365:1 11/11 None
Y41D4B.6 ENSEMBL cdna:known chromosome:CEL140:IV:1633770:1637365:1 gene:Y41D4B.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1633803-1637371(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.6
Entrez Gene 176974 Entrez gene
WormBase CE39048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68480 Hypothetical protein Y41D4B.6 [Caenorhabditis elegans] ref|NP_500113.1| Y41D4B.6 [Caenorhabditis elegans] 1.0E-179
blast AAK68480 Hypothetical protein Y41D4B.6 [Caenorhabditis elegans] ref|NP_500113.1| Y41D4B.6 [Caenorhabditis elegans] 1.0E-151
blast AAK68480 Hypothetical protein Y41D4B.6 [Caenorhabditis elegans] ref|NP_500113.1| Y41D4B.6 [Caenorhabditis elegans] 3.0E-49
blast CAE67972 Hypothetical protein CBG13578 [Caenorhabditis briggsae] 4.0E-33
blast AAL32241 Hypothetical protein Y41D4B.26 [Caenorhabditis elegans] ref|NP_741322.2| Y41D4B.26 [Caenorhabditis elegans] 7.0E-17
blast AAL32241 Hypothetical protein Y41D4B.26 [Caenorhabditis elegans] ref|NP_741322.2| Y41D4B.26 [Caenorhabditis elegans] 8.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500113.1 1 7-26
Y41D4B.6 1 7-26
GENEFINDER00000005526 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:176081_AT
gaagggtgccaaatgcgacgttccttgtcaggaaaaatgtaccgccgacacaaaaatcga
taatccattgaaagtagatattgattattccattgatttgtcaaaactgccaacatttgt
ccaaaggctcaaagagaccacccacgtggataataagatcagagttccgactggaacccc
tagacaggtccctaaggaggtttcaaaagaaacgaaatcgaaagaatccaactcggatgc
cttgggaaattcaatatcaagacttatctcgtcgttgaagaattttatttctggaggccg
ctctagcattattccaggaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGGTGCCAAATGCGACGTTCCT 422 335 456 Antisense
GCCAAATGCGACGTTCCTTGTCAGG 68 279 463 Antisense
TCAGGAAAAATGTACCGCCGACACA 502 623 483 Antisense
ACTGCCAACATTTGTCCAAAGGCTC 297 99 561 Antisense
AAAGGCTCAAAGAGACCACCCACGT 56 119 578 Antisense
CAGAGTTCCGACTGGAACCCCTAGA 642 161 615 Antisense
TAGACAGGTCCCTAAGGAGGTTTCA 494 635 636 Antisense
GAATCCAACTCGGATGCCTTGGGAA 285 329 679 Antisense
TATCAAGACTTATCTCGTCGTTGAA 506 659 710 Antisense
TTATTTCTGGAGGCCGCTCTAGCAT 271 679 740 Antisense
CCGCTCTAGCATTATTCCAGGAATT 450 263 753 Antisense
Sequence Source Affymetrix Proprietary Database