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[176080_at]

Description ZK370.8 /REP_DB=WormBase Gene ID /WP=CE00400 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 30      6grp_total > 26      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 905
1 2 3 4 range
A 1007.3
(2.1)
P 		910.6
(1.3)
P 		1116.8
(3)
P 		371.9
(-3)
P 		745
B 1122.9
(2.3)
P 		1063.2
(1.9)
P 		1225.4
(3)
P 		346
(-3)
P 		879
C 1199.7
(2.6)
P 		1083.2
(1.7)
P 		1250.8
(3)
P 		491.8
(-3)
P 		759
avr 1110
(2.3) 		1019
(1.7) 		1197.7
(3) 		403.2
(-3) 		795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 717
1 2 3 4 5 6 range
A 1001.1
(1.6)
P 		1129.1
(3)
P 		714.1
(-1.6)
P 		830.2
(-0.3)
P 		584.3
(-3)
P 		623.2
(-2.6)
P 		545
B 950.3
(3)
P 		837.1
(0.1)
P 		717.7
(-3)
P 		758.8
(-1.9)
P 		729.9
(-2.7)
P 		743.3
(-2.3)
P 		233
C 1259.6
(3)
P 		984.9
(0.7)
P 		785.9
(-1)
P 		542.4
(-3)
P 		582.6
(-2.7)
P 		731.4
(-1.4)
P 		717
avr 1070.3
(3) 		983.7
(1.8) 		739.2
(-1.5) 		710.5
(-1.9) 		632.3
(-3) 		699.3
(-2.1) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 366.7
(3)
P 		197.7
(-0.2)
P 		291.9
(1.6)
P 		54.4
(-3)
P 		312
B 358.1
(3)
P 		262.6
(1)
P 		284
(1.4)
P 		73.7
(-3)
P 		284
C 397.1
(2.3)
P 		311.4
(0.9)
P 		436
(3)
P 		82.9
(-3)
P 		353
avr 374
(3) 		257.2
(0.7) 		337.3
(2.3) 		70.3
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 184.5
(-2.2)
P 		401.5
(3)
P 		155.5
(-2.9)
P 		210.6
(-1.6)
P 		176.3
(-2.4)
P 		151.7
(-3)
P 		250
B 330.7
(3)
P 		278.6
(1)
P 		174.3
(-3)
P 		201
(-2)
P 		296.6
(1.7)
P 		277.2
(0.9)
P 		156
C 466.9
(3)
P 		300.5
(0.2)
P 		200
(-1.5)
P 		109.1
(-3)
P 		188.5
(-1.7)
P 		244.8
(-0.7)
P 		358
avr 327.4
(3) 		326.9
(3) 		176.6
(-2.9) 		173.6
(-3) 		220.5
(-1.2) 		224.6
(-1) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7590
Sequence Type Exemplar sequence
Representative Public ID ZK370.8 NCBI
Target Description ZK370.8 /REP_DB=WormBase Gene ID /WP=CE00400 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066531 NCBI Caenorhabditis elegans ZK370.8 (ZK370.8) mRNA, complete cds. 11/11 None
SNAP00000004300 ENSEMBL cdna:SNAP chromosome:CEL140:III:8752203:8754653:-1 9/11 None
GENEFINDER00000004304 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8752203:8754648:-1 9/11 None
ZK370.8 ENSEMBL cdna:known chromosome:CEL140:III:8752003:8754653:-1 gene:ZK370.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8752013-8754644(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK370.8
Entrez Gene 176228 Entrez gene
SwissProt Q02335 EMBL-EBI
WormBase CE34456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28210 Hypothetical protein ZK370.8 [Caenorhabditis elegans] ref|NP_498932.2| ZK370.8 [Caenorhabditis elegans] sp|Q02335|YOL8_CAEEL Hypothetical protein ZK370.8 in chromosome III 0.0
blast S44669 ZK370.8 protein - Caenorhabditis elegans 0.0
blast CAE62759 Hypothetical protein CBG06925 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498932.2 1 13-32
ZK370.8 1 13-32
SNAP00000004300 1 16-34
GENEFINDER00000004304 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:176080_AT
gaagactacgctgatgttcatcgacgaatccgagaaatggaagaactcgcagagagtaga
tctactcatttcaatctggttcttatgtccaaagtatatatgatgactaataatgaggag
agctcgaagaagttgctcgaagaggctgcaaggattactacgagatatttggtgccaagt
aggcatttgcagactgctgatctccacgtgcacaaaccagaagctgaacgactcagattg
acaactgaaagtgccaacgcagcaattgcagttgatccattcaatttctcggctcacgtt
cttcatcttttgggaactaacgggccagagccgatgatcaagaaagaaaattacgagcga
gcaatggaatcaattcgaaatgcagctctatttgccccaccacgagaacttctcatgttg
aagagaatgattccattgatgaatgctaagaaacgtgcagctgaaatgctcgatattttt
cgggtttctcaaaatcaacccatccgttttccagttccgttccttacctactgtgttcgt
tttcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACTACGCTGATGTTCATCGAC 34 341 1288 Antisense
GATCTACTCATTTCAATCTGGTTCT 401 419 1346 Antisense
GCATTTGCAGACTGCTGATCTCCAC 235 309 1470 Antisense
ATCTCCACGTGCACAAACCAGAAGC 158 29 1487 Antisense
AAGTGCCAACGCAGCAATTGCAGTT 328 159 1536 Antisense
TTGATCCATTCAATTTCTCGGCTCA 398 705 1559 Antisense
CTCACGTTCTTCATCTTTTGGGAAC 487 227 1580 Antisense
GGGAACTAACGGGCCAGAGCCGATG 227 495 1599 Antisense
CCCCACCACGAGAACTTCTCATGTT 6 263 1682 Antisense
TCTCAAAATCAACCCATCCGTTTTC 404 611 1774 Antisense
TTACCTACTGTGTTCGTTTTCTTAT 379 681 1811 Antisense
Sequence Source Affymetrix Proprietary Database