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[176079_at]

Description Y41D4B.J /REP_DB=WormBase Gene ID /WP=CE21857 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 34      4grp_total > 61      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 173.7
(3)
A 		115
(0.2)
A 		130.4
(0.9)
A 		48.2
(-3)
A 		126
B 167.9
(3)
A 		146.1
(2.2)
A 		136.9
(1.8)
A 		6.7
(-3)
A 		161
C 163.8
(3)
A 		89.3
(0)
A 		137.9
(2)
A 		14.5
(-3)
A 		149
avr 168.5
(3) 		116.8
(0.9) 		135.1
(1.6) 		23.1
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 80.5
(1.1)
A 		84.8
(1.4)
A 		110.4
(3)
A 		100.5
(2.4)
A 		15.1
(-3)
A 		76.6
(0.9)
A 		95
B 163.5
(3)
A 		122.1
(1)
A 		99.7
(-0)
A 		36.7
(-3)
A 		38
(-2.9)
A 		38.8
(-2.9)
A 		127
C 146.2
(3)
A 		46.4
(-1.5)
A 		125.6
(2.1)
A 		33.2
(-2.1)
A 		14
(-3)
A 		27.4
(-2.4)
A 		132
avr 130.1
(3) 		84.4
(0.5) 		111.9
(2) 		56.8
(-1.1) 		22.4
(-3) 		47.6
(-1.6) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 63.2
(3)
A 		25
(-1.1)
A 		34.1
(-0.1)
A 		7.1
(-3)
A 		56
B 53.5
(3)
A 		36.1
(1)
A 		31.7
(0.5)
A 		1.4
(-3)
A 		52
C 54.2
(3)
A 		25.7
(-0.3)
A 		48
(2.3)
A 		2.4
(-3)
A 		52
avr 57
(3) 		28.9
(-0.2) 		37.9
(0.9) 		3.6
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 14.8
(-0.6)
A 		30.2
(3)
A 		24
(1.5)
A 		25.5
(1.9)
A 		4.6
(-3)
A 		18.6
(0.3)
A 		26
B 56.9
(3)
A 		40.6
(0.9)
A 		24.2
(-1.2)
A 		9.7
(-3)
A 		15.5
(-2.3)
A 		14.5
(-2.4)
A 		47
C 54.2
(3)
A 		14.2
(-1.8)
A 		32
(0.3)
A 		6.7
(-2.7)
A 		4.5
(-3)
A 		9.2
(-2.4)
A 		50
avr 42
(3) 		28.3
(0.6) 		26.7
(0.3) 		14
(-2) 		8.2
(-3) 		14.1
(-2) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19136
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.J NCBI
Target Description Y41D4B.J /REP_DB=WormBase Gene ID /WP=CE21857 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067697 NCBI Caenorhabditis elegans Y41D4B.18 (Y41D4B.18) mRNA, complete cds. 11/11 None
SNAP00000005506 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1558051:1559631:1 11/11 None
GENEFINDER00000005548 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1558517:1560001:1 11/11 None
Y41D4B.18 ENSEMBL cdna:known chromosome:CEL140:IV:1558517:1559631:1 gene:Y41D4B.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1558522-1559637(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.18
Entrez Gene 189823 Entrez gene
SwissProt Q95Y19 EMBL-EBI
WormBase CE21857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68468 Hypothetical protein Y41D4B.18 [Caenorhabditis elegans] ref|NP_500098.1| Y41D4B.18 [Caenorhabditis elegans] 1.0E-138
blast AAK68468 Hypothetical protein Y41D4B.18 [Caenorhabditis elegans] ref|NP_500098.1| Y41D4B.18 [Caenorhabditis elegans] 1.0E-137
blast AAK68467 Hypothetical protein Y41D4B.17 [Caenorhabditis elegans] ref|NP_500099.1| Y41D4B.17 [Caenorhabditis elegans] 1.0E-114
blast AAK68467 Hypothetical protein Y41D4B.17 [Caenorhabditis elegans] ref|NP_500099.1| Y41D4B.17 [Caenorhabditis elegans] 3.0E-89
blast AAK68467 Hypothetical protein Y41D4B.17 [Caenorhabditis elegans] ref|NP_500099.1| Y41D4B.17 [Caenorhabditis elegans] 4.0E-89
blast AAC04390 Hypothetical protein C34H4.1 [Caenorhabditis elegans] ref|NP_500097.1| C34H4.1 [Caenorhabditis elegans] 7.0E-61
blast AAC04390 Hypothetical protein C34H4.1 [Caenorhabditis elegans] ref|NP_500097.1| C34H4.1 [Caenorhabditis elegans] 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 2.2E-32
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.2E-48
Sequence
Target Sequence 
>C. ELEGANS:176079_AT
tttctacgccgagctcaaacgtggatttcatgtttaattccggccataatggaatcgtcg
gacttcttgtcagcaccgctctattcgccgacgcaaatgcaacatttagcaacaacttgg
agccggacacattgcgattgcacccggatccagcgataatttctcgcgtcttcgaatggt
attcaaatgcgacaaacctgtatgtgacaccgagccaaggtgtctactatatccaatact
ttcgggcagacctgaacgagccaacaaccacttcgacggcttatgctgcgccttcatcca
ctgcatctacatctactccagctccaacaaatctaccaacgacgactggggctccgacaa
actccacaacaaatccaccaaccgccacgagtccaaaaactagcagtcaaccagtatctt
cttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTACGCCGAGCTCAAACGTGGA 306 669 431 Antisense
GCTCTATTCGCCGACGCAAATGCAA 544 299 508 Antisense
TGGAGCCGGACACATTGCGATTGCA 221 549 548 Antisense
CACCCGGATCCAGCGATAATTTCTC 60 201 571 Antisense
TAATTTCTCGCGTCTTCGAATGGTA 222 635 587 Antisense
GACAAACCTGTATGTGACACCGAGC 133 365 621 Antisense
GAGCCAAGGTGTCTACTATATCCAA 667 383 642 Antisense
TATCCAATACTTTCGGGCAGACCTG 500 641 660 Antisense
AACAACCACTTCGACGGCTTATGCT 420 135 693 Antisense
AATCTACCAACGACGACTGGGGCTC 212 165 760 Antisense
AGCAGTCAACCAGTATCTTCTTCAA 523 77 832 Antisense
Sequence Source Affymetrix Proprietary Database