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[176078_at]

Description K12H4.6 /REP_DB=WormBase Gene ID /WP=CE00271 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 15.1
(-1.9)
A 		23.4
(-0.6)
A 		7.7
(-3)
A 		46.4
(3)
A 		39
B 17.9
(0.5)
A 		7
(-3)
A 		25.8
(3)
A 		25.6
(2.9)
A 		19
C 6.1
(-2)
A 		6.2
(-2)
A 		1.9
(-3)
A 		27.2
(3)
A 		25
avr 13
(-2.7) 		12.2
(-2.9) 		11.8
(-3) 		33.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 5.7
(-2.7)
A 		3.5
(-3)
A 		47.7
(3)
A 		17.3
(-1.1)
A 		29
(0.5)
A 		6
(-2.7)
A 		44
B 2.7
(-3)
A 		4.4
(-1.5)
A 		9.4
(3)
A 		9.2
(2.8)
A 		6.2
(0.1)
A 		3
(-2.7)
A 		7
C 15.5
(0.5)
A 		5.9
(-2)
A 		3.5
(-2.6)
A 		2.1
(-3)
A 		18.2
(1.2)
A 		25.2
(3)
A 		23
avr 8
(-1.7) 		4.6
(-3) 		20.2
(3) 		9.5
(-1.1) 		17.8
(2.1) 		11.4
(-0.4) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 5.5
(1.4)
A 		5.1
(0.9)
A 		2
(-3)
A 		6.8
(3)
A 		5
B 5.7
(2.6)
A 		1.7
(-3)
A 		6
(3)
A 		5.5
(2.3)
A 		4
C 2
(-0.9)
A 		1.8
(-1.2)
A 		0.6
(-3)
A 		4.6
(3)
A 		4
avr 4.4
(0.3) 		2.9
(-3) 		2.9
(-3) 		5.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.2
(-2.9)
A 		10.4
(3)
A 		4.4
(-0.9)
A 		8.7
(1.9)
A 		1.5
(-2.7)
A 		9
B 0.9
(-3)
A 		1.5
(-0.8)
A 		2.3
(2.3)
A 		2.4
(2.6)
A 		2.5
(3)
A 		1.1
(-2.3)
A 		2
C 5.7
(1)
A 		1.8
(-2)
A 		0.9
(-2.6)
A 		0.4
(-3)
A 		5.9
(1.1)
A 		8.4
(3)
A 		8
avr 2.6
(-1.4) 		1.5
(-3) 		4.5
(1.3) 		2.4
(-1.7) 		5.7
(3) 		3.7
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7529
Sequence Type Exemplar sequence
Representative Public ID K12H4.6 NCBI
Target Description K12H4.6 /REP_DB=WormBase Gene ID /WP=CE00271 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066352 NCBI Caenorhabditis elegans K12H4.6 (K12H4.6) mRNA, complete cds. 11/11 None
SNAP00000000450 ENSEMBL cdna:SNAP chromosome:CEL140:III:8042500:8042797:-1 11/11 None
K12H4.6 ENSEMBL cdna:known chromosome:CEL140:III:8042500:8042797:-1 gene:K12H4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8042497-8042795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H4.6
Entrez Gene 187338 Entrez gene
SwissProt P34527 EMBL-EBI
WormBase CE00271 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498753 K12H4.6 [Caenorhabditis elegans] gb|AAA28094.1| Hypothetical protein K12H4.6 [Caenorhabditis elegans] sp|P34527|YM66_CAEEL Hypothetical protein K12H4.6 in chromosome III 7.0E-23
Sequence
Target Sequence 
>C. ELEGANS:176078_AT
taaacgacagggagctcgtcagcgcgattcaaagggaaagttcgttaaggccagaactgg
catggcaaccgcccacctgctgcagtttcaaccgcagctcctaccggtaaatttcacatc
gacaatgaccccaactggatccagcacaacggccactattggaggagctacaactggagc
gtcgacaaccacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACGACAGGGAGCTCGTCAGCGC 604 639 36 Antisense
AGCTCGTCAGCGCGATTCAAAGGGA 184 81 48 Antisense
GGAAAGTTCGTTAAGGCCAGAACTG 438 525 70 Antisense
GGCCAGAACTGGCATGGCAACCGCC 663 541 84 Antisense
CCGCAGCTCCTACCGGTAAATTTCA 166 257 127 Antisense
CCTACCGGTAAATTTCACATCGACA 305 267 135 Antisense
TTTCACATCGACAATGACCCCAACT 440 673 147 Antisense
ATCCAGCACAACGGCCACTATTGGA 26 41 174 Antisense
CAACGGCCACTATTGGAGGAGCTAC 391 183 182 Antisense
GAGGAGCTACAACTGGAGCGTCGAC 239 403 197 Antisense
CAACTGGAGCGTCGACAACCACAGC 434 187 206 Antisense
Sequence Source Affymetrix Proprietary Database