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[176076_s_at]

Description ZK370.7 /REP_DB=WormBase Gene ID /WP=CE00399 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 82      6grp_total > 84      4grp_total > 21      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 295.9
(0.5)
P 		280.5
(-0.2)
P 		221.3
(-3)
P 		348.6
(3)
P 		127
B 385.9
(3)
P 		214.1
(-2.2)
P 		186.6
(-3)
P 		332.6
(1.4)
P 		199
C 359.9
(2)
P 		309.4
(0.2)
P 		214.1
(-3)
P 		390.5
(3)
P 		176
avr 347.2
(2.6) 		268
(-0.6) 		207.3
(-3) 		357.2
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 234.1
(-3)
P 		236.1
(-2.9)
P 		321.4
(0.8)
P 		338.1
(1.5)
P 		371.7
(3)
P 		309.9
(0.3)
P 		138
B 264.1
(-2.9)
P 		295.2
(-1.7)
P 		260.2
(-3)
P 		316.2
(-0.9)
P 		422
(3)
P 		394.2
(2)
P 		162
C 247.6
(-3)
P 		286.2
(-1.6)
P 		295.4
(-1.3)
P 		391.6
(2.1)
P 		321.3
(-0.4)
P 		418.6
(3)
P 		171
avr 248.6
(-3) 		272.5
(-1.9) 		292.3
(-0.9) 		348.6
(1.8) 		371.7
(2.9) 		374.2
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 107.7
(3)
P 		60.9
(-2)
P 		57.9
(-2.3)
P 		51
(-3)
P 		57
B 123.1
(3)
P 		52.9
(-2.3)
P 		43.2
(-3)
P 		70.9
(-0.9)
P 		80
C 119.1
(3)
P 		88.9
(-0.4)
P 		74.6
(-2)
P 		65.9
(-3)
P 		53
avr 116.6
(3) 		67.6
(-2.1) 		58.6
(-3) 		62.6
(-2.6) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 43.2
(-3)
P 		84
(0.5)
P 		70
(-0.7)
P 		85.7
(0.7)
P 		112.2
(3)
P 		75.4
(-0.2)
P 		69
B 91.9
(-1.4)
P 		98.3
(-1.1)
P 		63.2
(-3)
P 		83.8
(-1.9)
P 		171.4
(3)
P 		147
(1.6)
P 		108
C 91.8
(-1.5)
P 		87.3
(-1.9)
P 		75.2
(-3)
P 		78.8
(-2.7)
P 		104
(-0.3)
P 		140.1
(3)
P 		65
avr 75.6
(-2.4) 		89.9
(-0.9) 		69.5
(-3) 		82.8
(-1.7) 		129.2
(3) 		120.8
(2.2) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176076_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7290
Sequence Type Exemplar sequence
Representative Public ID ZK370.7 NCBI
Target Description ZK370.7 /REP_DB=WormBase Gene ID /WP=CE00399 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066529 NCBI Caenorhabditis elegans ZK370.7 (ZK370.7) mRNA, complete cds. 11/11 None
SNAP00000004298 ENSEMBL cdna:SNAP chromosome:CEL140:III:8746362:8748602:-1 11/11 None
GENEFINDER00000004301 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8746362:8748602:-1 11/11 None
ZK370.7 ENSEMBL cdna:known chromosome:CEL140:III:8746182:8748604:-1 gene:ZK370.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8746357-8747840(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK370.7
Entrez Gene 176227 Entrez gene
SwissProt Q02334 EMBL-EBI
WormBase CE29642 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249282_AT nucleotide-sugar transporter family protein at
CANINE:1582469_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 cfa
CANINE:1582468_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 cfa
CANINE_2:CFA.2481.1.S2_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 cfa
CANINE_2:CFAAFFX.5543.1.S1_S_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 cfa
CHICKEN:GGA.4430.1.S1_A_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 gga
CHICKEN:GGA.4430.2.S1_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 gga
HG-U133_PLUS_2:203306_S_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
HG-U133A:203306_S_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
HG-FOCUS:203306_S_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
HG-U133A_2:203306_S_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
HU35KSUBD:RC_AA481542_S_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
HUGENEFL:D87969_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
U133_X3P:G5453620_3P_A_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
HG-U95AV2:37895_AT solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
HU35KSUBC:RC_N74442_AT Solute carrier family 35 (CMP-sialic acid transporter), member A1 hs
MU11KSUBB:Z71268_S_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MG-U74AV2:104380_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MOE430A:1417539_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MOUSE430A_2:1417539_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MOUSE430_2:1417539_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MOE430A:1417538_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MOUSE430A_2:1417538_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MOUSE430_2:1417538_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 mm
MU19KSUBC:TC38456_AT Solute carrier family 35 (CMP-sialic acid transporter), member 1, mRNA (cDNA clone MGC:18789 IMAGE:4190458) mm
RG-U34C:RC_AI072449_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) rn
RAE230A:1386078_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) rn
RAT230_2:1386078_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) rn
RAE230A:1375254_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) rn
RAT230_2:1375254_AT solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) rn
RAE230A:1386077_AT Similar to hypothetical protein (predicted) rn
RAT230_2:1386077_AT Similar to hypothetical protein (predicted) rn
RG-U34A:RC_AA891822_AT Similar to hypothetical protein (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
15780 nucleotide-sugar transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
139 Golgi membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5338 nucleotide-sugar transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK82925 Hypothetical protein ZK370.7 [Caenorhabditis elegans] ref|NP_498930.1| ZK370.7 [Caenorhabditis elegans] sp|Q02334|YOL7_CAEEL Hypothetical protein ZK370.7 in chromosome III 0.0
blast AAK82925 Hypothetical protein ZK370.7 [Caenorhabditis elegans] ref|NP_498930.1| ZK370.7 [Caenorhabditis elegans] sp|Q02334|YOL7_CAEEL Hypothetical protein ZK370.7 in chromosome III 1.0E-164
blast CAE62760 Hypothetical protein CBG06926 [Caenorhabditis briggsae] 1.0E-158
blast CAE62760 Hypothetical protein CBG06926 [Caenorhabditis briggsae] 1.0E-136
blast S44668 ZK370.7 protein - Caenorhabditis elegans 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498930.1 7 38-60,73-95,146-168,209-231,282-299,306-328,332-354
ZK370.7 7 38-60,73-95,146-168,209-231,282-299,306-328,332-354
SNAP00000004298 6 38-60,110-132,173-195,246-263,270-292,296-318
GENEFINDER00000004301 7 38-60,73-95,146-168,209-231,282-299,306-328,332-354
Sequence
Target Sequence 
>C. ELEGANS:176076_S_AT
gaaagtcgtctctacagcttttttcatgatgctctttctcggtcgaaagttctcaactcg
tcgatggatggcaattacacttctaatgtttggagtagcatttgttcaaatgaacaatgt
ttctgcatcagaagccaatacaaaacgagaaactgctgaaaattatattgtcggattatc
agctgtactggcaacgtgtgtaactgctggatttgctggagtctattttgagaagatgtt
gaaagatggtggaagtacaccattttggattcgtaatatgcaaatgtacagttgtggagt
gatcagtgcttcaatcgcttgtctcacggatttttcgcggatctccgataagggattttt
cttcggttacacggacaaagtatgggcagttgtgattcttcttggcgttggaggcctcta
catttctcttgtgatgcgatatcttgataatctgtacaaatcaatggcttcagcagtctc
tatcattctagttgttgttctttcgatgctcatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTCGTCTCTACAGCTTTTTTC 297 361 201 Antisense
GCTTTTTTCATGATGCTCTTTCTCG 170 305 217 Antisense
GTTCTCAACTCGTCGATGGATGGCA 138 443 249 Antisense
TCAGCTGTACTGGCAACGTGTGTAA 421 625 379 Antisense
GTGATCAGTGCTTCAATCGCTTGTC 113 485 499 Antisense
TTGTCTCACGGATTTTTCGCGGATC 121 709 519 Antisense
ATGGGCAGTTGTGATTCTTCTTGGC 1 51 582 Antisense
TTCTTGGCGTTGGAGGCCTCTACAT 670 687 599 Antisense
GCCTCTACATTTCTCTTGTGATGCG 227 281 614 Antisense
AATGGCTTCAGCAGTCTCTATCATT 185 163 663 Antisense
GTTGTTGTTCTTTCGATGCTCATAT 73 439 691 Antisense
Sequence Source Affymetrix Proprietary Database