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[176074_s_at]

Description Y32G9B.A /REP_DB=WormBase Gene ID /WP=CE26516 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 82      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 139.7
(-1.6)
A 		380.4
(1.9)
P 		457.1
(3)
P 		47.2
(-3)
A 		410
B 113.1
(-2)
A 		387.8
(1.7)
P 		486.7
(3)
P 		34.1
(-3)
A 		453
C 115.3
(-2.5)
A 		391.4
(3)
P 		373.8
(2.6)
P 		91.9
(-3)
A 		300
avr 122.7
(-2) 		386.5
(2.2) 		439.2
(3) 		57.7
(-3) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 119.7
(-3)
A 		304.2
(1.4)
P 		266.5
(0.5)
P 		322.3
(1.9)
P 		368.9
(3)
P 		177.8
(-1.6)
P 		249
B 167.3
(-3)
M 		350.7
(0)
P 		314.6
(-0.6)
P 		533.7
(3)
P 		438.8
(1.4)
P 		227.2
(-2)
P 		366
C 126.3
(-3)
M 		322.6
(0.9)
P 		340.2
(1.2)
P 		422.4
(2.8)
P 		430.7
(3)
P 		186.4
(-1.8)
P 		304
avr 137.8
(-3) 		325.8
(0.9) 		307.1
(0.5) 		426.1
(3) 		412.8
(2.7) 		197.1
(-1.8) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 50.9
(-0.7)
A 		82.6
(1)
P 		119.5
(3)
P 		6.9
(-3)
A 		113
B 36.1
(-1.4)
A 		95.8
(2)
P 		112.8
(3)
P 		7.3
(-3)
A 		106
C 38.2
(-1.8)
A 		112.5
(2.1)
P 		130.3
(3)
P 		15.5
(-3)
A 		115
avr 41.7
(-1.3) 		97
(1.7) 		120.9
(3) 		9.9
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 22.1
(-3)
A 		108.2
(2.8)
P 		58
(-0.6)
P 		81.7
(1)
P 		111.3
(3)
P 		43.3
(-1.6)
P 		89
B 58.2
(-3)
M 		116.7
(-0.1)
P 		76.4
(-2.1)
P 		141.4
(1.2)
P 		178.3
(3)
P 		84.7
(-1.7)
P 		120
C 46.8
(-3)
M 		98.4
(0.3)
P 		86.6
(-0.4)
P 		84.9
(-0.5)
P 		139.4
(3)
P 		62.4
(-2)
P 		93
avr 42.4
(-3) 		107.8
(0.9) 		73.7
(-1.1) 		102.7
(0.6) 		143
(3) 		63.5
(-1.7) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176074_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19508
Sequence Type Exemplar sequence
Representative Public ID Y32G9B.A NCBI
Target Description Y32G9B.A /REP_DB=WormBase Gene ID /WP=CE26516 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071112(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071112 NCBI Caenorhabditis elegans Y32G9B.1 (Y32G9B.1) mRNA, complete cds. 11/11 None
SNAP00000000142 ENSEMBL cdna:SNAP chromosome:CEL140:V:1822981:1829693:-1 11/11 None
GENEFINDER00000000147 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1823023:1828684:-1 11/11 None
Y32G9B.1 ENSEMBL cdna:known chromosome:CEL140:V:1822978:1829768:-1 gene:Y32G9B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1822980-1824727(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32G9B.1
Entrez Gene 178662 Entrez gene
SwissProt Q965Y2 EMBL-EBI
WormBase CE28113 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71405 Hypothetical protein Y32G9B.1 [Caenorhabditis elegans] ref|NP_503513.1| Y32G9B.1 [Caenorhabditis elegans] 1.0E-167
blast CAE74139 Hypothetical protein CBG21810 [Caenorhabditis briggsae] 1.0E-143
blast AAK71405 Hypothetical protein Y32G9B.1 [Caenorhabditis elegans] ref|NP_503513.1| Y32G9B.1 [Caenorhabditis elegans] 1.0E-122
blast CAE74139 Hypothetical protein CBG21810 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:176074_S_AT
agtgctcccgaactagcaagaccaccagcgccgacaaacgctttcgacggcagcccattc
atgcaaatcgcccgtcgattccttcaagttggcaccggcaccgggaccccaactgaggga
ggcaaagcggagccactcccgcagatcggaatccgagattttatgccaaatacggatagt
aactttggcctgccacgtggcaaaggctgccttccatttatatcggaattcatgcaaatc
gcgtatggaaaatgccaggatcaagccgacgagaagacgttcgacgcgtggggtgaagaa
cttcgacgagcaattcttcacggagaaatcgatttgctgaaagcatcccaggagacgtgc
cgacgtggtgcagaacggcaacagtgtgattcgctgcgagaagccgttgccacgtgtgat
gtgatggcaagcttggaaatcggaacacaattgcagagagccatgaagagatgcgaagaa
gtgtctggaatgatggatcagtcgcctgcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCTCCCGAACTAGCAAGACCAC 331 59 247 Antisense
AGCGCCGACAAACGCTTTCGACGGC 562 81 273 Antisense
TTCGACGGCAGCCCATTCATGCAAA 612 695 289 Antisense
GCCCGTCGATTCCTTCAAGTTGGCA 67 287 316 Antisense
CACTCCCGCAGATCGGAATCCGAGA 489 197 380 Antisense
GATAGTAACTTTGGCCTGCCACGTG 280 425 421 Antisense
CAAAGGCTGCCTTCCATTTATATCG 138 193 447 Antisense
AGACGTTCGACGCGTGGGGTGAAGA 144 69 521 Antisense
GAAAGCATCCCAGGAGACGTGCCGA 677 359 585 Antisense
TGATTCGCTGCGAGAAGCCGTTGCC 220 559 633 Antisense
AATGATGGATCAGTCGCCTGCAGCT 91 165 735 Antisense
Sequence Source Affymetrix Proprietary Database