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[176071_at]

Description B0403.3 /REP_DB=WormBase Gene ID /WP=CE03883 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      6grp_total > 31      4grp_total > 44      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 90.4
(3)
P 		72.9
(-1.8)
A 		68.7
(-3)
A 		87.3
(2.1)
A 		22
B 86.9
(-3)
A 		109.8
(3)
A 		98.7
(0.1)
A 		99.6
(0.3)
P 		23
C 101.2
(0.4)
P 		117.8
(3)
A 		88.9
(-1.6)
M 		79.9
(-3)
A 		38
avr 92.8
(-0) 		100.2
(3) 		85.4
(-3) 		88.9
(-1.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 79
(-1.8)
P 		109.9
(0.5)
P 		144.4
(3)
P 		81.2
(-1.6)
A 		97.6
(-0.4)
P 		62.1
(-3)
A 		82
B 98.5
(-1.5)
P 		133.2
(2.7)
P 		135.8
(3)
P 		105.4
(-0.7)
P 		111.6
(0.1)
P 		86.3
(-3)
P 		50
C 124
(2.9)
P 		111.3
(1.7)
P 		114.8
(2.1)
P 		125.4
(3)
P 		85.4
(-0.6)
M 		58.2
(-3)
P 		67
avr 100.5
(0) 		118.1
(1.7) 		131.7
(3) 		104
(0.4) 		98.2
(-0.2) 		68.9
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 32.9
(3)
P 		15.8
(-2.1)
A 		18
(-1.4)
A 		12.8
(-3)
A 		20
B 27.7
(3)
A 		27.1
(2.4)
A 		22.9
(-1.4)
A 		21.2
(-3)
P 		7
C 33.5
(2.9)
P 		33.9
(3)
A 		31
(2.1)
M 		13.5
(-3)
A 		20
avr 31.4
(3) 		25.6
(0.8) 		24
(0.2) 		15.8
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 14.6
(-3)
P 		39.1
(3)
P 		31.4
(1.1)
P 		20.6
(-1.5)
A 		29.5
(0.6)
P 		15.1
(-2.9)
A 		25
B 34.3
(-0.8)
P 		44.3
(2.7)
P 		33
(-1.2)
P 		27.9
(-3)
P 		45.3
(3)
P 		32.2
(-1.5)
P 		17
C 46
(3)
P 		34
(0.3)
P 		29.2
(-0.8)
P 		25.2
(-1.7)
P 		27.6
(-1.2)
M 		19.5
(-3)
P 		27
avr 31.6
(0.3) 		39.1
(3) 		31.2
(0.2) 		24.6
(-2.2) 		34.1
(1.2) 		22.3
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16746
Sequence Type Exemplar sequence
Representative Public ID B0403.3 NCBI
Target Description B0403.3 /REP_DB=WormBase Gene ID /WP=CE03883 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076788 NCBI Caenorhabditis elegans B0403.3 (B0403.3) mRNA, complete cds. 11/11 None
SNAP00000026985 ENSEMBL cdna:SNAP chromosome:CEL140:X:7061796:7063439:-1 11/11 None
GENEFINDER00000026989 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7061796:7066438:-1 11/11 None
B0403.3 ENSEMBL cdna:known chromosome:CEL140:X:7061796:7063006:-1 gene:B0403.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7061794-7063005(-) 80.59 100.0
Public Domain and Genome References
Gene Title
Ensembl B0403.3
Entrez Gene 181980 Entrez gene
WormBase CE38993 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47066 Hypothetical protein B0403.3 [Caenorhabditis elegans] 1.0E-160
blast NP_509189 B0403.3 [Caenorhabditis elegans] sp|Q11077|YWV3_CAEEL Hypothetical protein B0403.3 in chromosome X 1.0E-159
blast CAE65836 Hypothetical protein CBG10961 [Caenorhabditis briggsae] 1.0E-137
blast AAC47066 Hypothetical protein B0403.3 [Caenorhabditis elegans] 1.0E-127
blast NP_509189 B0403.3 [Caenorhabditis elegans] sp|Q11077|YWV3_CAEEL Hypothetical protein B0403.3 in chromosome X 1.0E-127
blast CAE65836 Hypothetical protein CBG10961 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026989 2 75-92,102-124
Sequence
Target Sequence 
>C. ELEGANS:176071_AT
gaaattccgctcgatacagcaattgtgaaaaatcgagcaaatttgaaaatgttttgctct
tcaacaatccaaaagtattcttgcctacgcaacgaatgcaagattcagcgtacaccatgg
tcggcagagaaacatatttgcgtcggccactttgacaattttgatcgaaacatcaactgc
ttgagcctcaccgacaaatatgtgcaaagagagtgttccaatgtctgcaatagcatcaag
attgaaatctcgcaagccgagatcgatagaatggctgaaatggattttagccgacaagag
aagagcgagtttgttgaacagaacaaacactgtaacgtcattgcgtgttaccagttgtgt
catgagtacatcataagcaaagtctgcattgatagcgcagttgcagcacgatcagttgtc
aaatcatactacgattcgtacttggagcgagagtatactgaattgaacaaagatgatcaa
gacgagctatattcgagcttttgtagaagagtcacacctggacaagacgagaatgagttt
accgcaaacatgaccagatacaacaatttgactcttgaccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTCCGCTCGATACAGCAATTG 477 363 208 Antisense
AATGTTTTGCTCTTCAACAATCCAA 220 163 255 Antisense
GTATTCTTGCCTACGCAACGAATGC 435 453 282 Antisense
TTCAGCGTACACCATGGTCGGCAGA 61 689 311 Antisense
ATTTGCGTCGGCCACTTTGACAATT 295 15 343 Antisense
AAACATCAACTGCTTGAGCCTCACC 8 129 375 Antisense
GAGCCTCACCGACAAATATGTGCAA 549 385 390 Antisense
GTCATTGCGTGTTACCAGTTGTGTC 24 467 544 Antisense
GCAGTTGCAGCACGATCAGTTGTCA 685 311 604 Antisense
GAAGAGTCACACCTGGACAAGACGA 377 339 713 Antisense
ACAACAATTTGACTCTTGACCGAAT 128 111 767 Antisense
Sequence Source Affymetrix Proprietary Database