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[176070_at]

Description Y41D4B.Q /REP_DB=WormBase Gene ID /WP=CE26094 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 95      4grp_total > 03      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 10.8
(-2.9)
A 		10.4
(-3)
A 		11.6
(-2.8)
A 		39.8
(3)
A 		29
B 17.4
(3)
A 		11.2
(-2.5)
A 		10.6
(-3)
A 		14.5
(0.4)
A 		7
C 12.5
(-2.7)
A 		12.9
(-2.7)
A 		10.3
(-3)
A 		57.1
(3)
A 		47
avr 13.6
(-2.4) 		11.5
(-2.8) 		10.8
(-3) 		37.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 13.7
(1)
A 		9.8
(-3)
A 		9.9
(-2.9)
A 		12.4
(-0.4)
A 		12.7
(-0.1)
A 		15.7
(3)
A 		6
B 9.6
(-2.9)
A 		9.4
(-3)
A 		11.7
(-2)
A 		15
(-0.5)
A 		22.8
(3)
A 		10.8
(-2.4)
A 		13
C 9.4
(-3)
A 		9.6
(-2.9)
A 		12.2
(-1.6)
A 		13.1
(-1.1)
A 		13.7
(-0.8)
A 		21.3
(3)
A 		12
avr 10.9
(-1.9) 		9.6
(-3) 		11.3
(-1.5) 		13.5
(0.4) 		16.4
(3) 		15.9
(2.6) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.9
(-0.3)
A 		2.3
(-3)
A 		3
(-1.8)
A 		5.8
(3)
A 		4
B 5.5
(3)
A 		2.8
(-2.4)
A 		2.5
(-3)
A 		3.1
(-1.8)
A 		3
C 4.1
(-2.5)
A 		3.7
(-2.9)
A 		3.6
(-3)
A 		9.6
(3)
A 		6
avr 4.5
(-0.1) 		2.9
(-3) 		3
(-2.8) 		6.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.5
(-1.9)
A 		3.5
(1.9)
A 		2.2
(-3)
A 		3.1
(0.4)
A 		3.8
(3)
A 		3.8
(3)
A 		2
B 3.4
(-2.4)
A 		3.1
(-2.7)
A 		2.8
(-3)
A 		4
(-1.9)
A 		9.3
(3)
A 		4
(-1.9)
A 		7
C 3.5
(-1.8)
A 		2.9
(-2.6)
A 		3.1
(-2.3)
A 		2.6
(-3)
A 		4.4
(-0.6)
A 		7.1
(3)
A 		5
avr 3.1
(-2.2) 		3.2
(-2) 		2.7
(-3) 		3.2
(-2) 		5.8
(3) 		5
(1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19141
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.Q NCBI
Target Description Y41D4B.Q /REP_DB=WormBase Gene ID /WP=CE26094 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171270 NCBI Caenorhabditis elegans Y41D4B.12a (Y41D4B.12) mRNA, complete cds. 11/11 None
GENEFINDER00000005541 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1602986:1605559:1 11/11 None
Y41D4B.12b ENSEMBL cdna:known chromosome:CEL140:IV:1602983:1605559:1 gene:Y41D4B.12 10/11 None
Y41D4B.12a ENSEMBL cdna:known chromosome:CEL140:IV:1602986:1605559:1 gene:Y41D4B.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171271 7/11 Cross Hyb Matching Probes None
SNAP00000005512 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176969 2 1 NM_171270 176070_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1597323-1605565(+) 99.05 100.0
Public Domain and Genome References
Ensembl Y41D4B.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68462 Hypothetical protein Y41D4B.12a [Caenorhabditis elegans] ref|NP_741320.1| Y41D4B.12a [Caenorhabditis elegans] 1.0E-145
blast CAE67965 Hypothetical protein CBG13569 [Caenorhabditis briggsae] 2.0E-95
blast AAM97972 Hypothetical protein Y41D4B.12b [Caenorhabditis elegans] ref|NP_741321.1| Y41D4B.12b [Caenorhabditis elegans] 7.0E-92
blast AAK68462 Hypothetical protein Y41D4B.12a [Caenorhabditis elegans] ref|NP_741320.1| Y41D4B.12a [Caenorhabditis elegans] 1.0E-85
blast AAM97972 Hypothetical protein Y41D4B.12b [Caenorhabditis elegans] ref|NP_741321.1| Y41D4B.12b [Caenorhabditis elegans] 4.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.1E-28
Pfam IPR001214 EMBL-EBI Nuclear protein SET 6.6E-34
Sequence
Target Sequence 
>C. ELEGANS:176070_AT
ccggttgctcgtgtctaatcaataaaatcgataattacactgtcgatggaaaaatcaata
aatcatcggagcttctaatcgagtgctccgatcaatgtgcctgcatactgctcccaactt
catgtaggaatcgagttgtgcaatgtggaccacagaaaaagctggaaattttcagcactt
gtgagatggcaaaaggattcggagttcgagccggcgagcagatagccgccggcgaatttg
tgtgcgaatacgctggggaatgtattggcgagcaagaagttgaacggagatgtcgagaat
tccgaggagacgataattatacgcttacgttgaaggagtttttcggtggaaaacccgtga
aaacgttcgtagacccgcgcctacgtggaaatatcggacggtttttaaatcatagctgtg
agccgaattgtgagattattttggctcgccttggcagaatgattcccgcggcggggattt
ttgcgaaacgcgacattgtacgtggcgaggagttgtgctacgattacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGTTGCTCGTGTCTAATCAATAA 552 265 962 Antisense
GAGCTTCTAATCGAGTGCTCCGATC 259 389 1030 Antisense
GATCAATGTGCCTGCATACTGCTCC 201 421 1051 Antisense
ATACTGCTCCCAACTTCATGTAGGA 653 23 1066 Antisense
GAGTTCGAGCCGGCGAGCAGATAGC 116 399 1163 Antisense
TAGCCGCCGGCGAATTTGTGTGCGA 692 649 1184 Antisense
ACCCGCGCCTACGTGGAAATATCGG 481 87 1334 Antisense
GTGAGATTATTTTGGCTCGCCTTGG 406 483 1391 Antisense
CGCCTTGGCAGAATGATTCCCGCGG 647 255 1408 Antisense
GCGGCGGGGATTTTTGCGAAACGCG 515 285 1429 Antisense
GGCGAGGAGTTGTGCTACGATTACG 348 541 1465 Antisense
Sequence Source Affymetrix Proprietary Database