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[176069_s_at]

Description C07H6.3 /REP_DB=WormBase Gene ID /WP=CE01153 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 61      4grp_high_8_8 > 49      6grp_highest_nonorm > 53      6grp_total > 71      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 985
1 2 3 4 range
A 1060.3
(3)
P 		628.6
(-0.2)
P 		559.9
(-0.7)
P 		249.6
(-3)
P 		811
B 1217.3
(3)
P 		633.4
(-0.7)
P 		652
(-0.6)
P 		273.6
(-3)
P 		944
C 1108
(3)
P 		555.9
(-0.8)
P 		705.3
(0.2)
P 		232.1
(-3)
A 		876
avr 1128.5
(3) 		606
(-0.6) 		639.1
(-0.3) 		251.8
(-3) 		877

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 623
1 2 3 4 5 6 range
A 603.7
(-0.9)
P 		846.9
(2.9)
P 		790.8
(2)
P 		856.5
(3)
P 		697.8
(0.6)
P 		467.2
(-3)
P 		389
B 560.1
(-1.5)
P 		706.5
(-0.1)
P 		785
(0.7)
P 		1025
(3)
P 		731.6
(0.2)
P 		401.9
(-3)
P 		623
C 552.2
(-2.2)
P 		792.4
(1.3)
P 		910.9
(3)
P 		860.9
(2.3)
P 		734.8
(0.4)
P 		496.9
(-3)
P 		414
avr 572
(-1.5) 		781.9
(1.3) 		828.9
(1.9) 		914.1
(3) 		721.4
(0.5) 		455.3
(-3) 		459
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 386.1
(3)
P 		136.5
(-1.3)
P 		146.4
(-1.1)
P 		36.5
(-3)
P 		350
B 388.2
(3)
P 		156.4
(-1.2)
P 		151.1
(-1.3)
P 		58.3
(-3)
P 		330
C 366.8
(3)
P 		159.8
(-0.8)
P 		245.8
(0.8)
P 		39.1
(-3)
A 		328
avr 380.4
(3) 		150.9
(-1.1) 		181.1
(-0.6) 		44.6
(-3) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 111.3
(-3)
P 		301.2
(3)
P 		172.2
(-1.1)
P 		217.2
(0.3)
P 		210.6
(0.1)
P 		113.8
(-2.9)
P 		190
B 194.9
(-1.2)
P 		235.2
(0.5)
P 		190.6
(-1.3)
P 		271.5
(2)
P 		297.2
(3)
P 		149.9
(-3)
P 		147
C 204.7
(0)
P 		241.8
(3)
P 		231.8
(2.2)
P 		173.1
(-2.5)
P 		237.8
(2.7)
P 		166.4
(-3)
P 		75
avr 170.3
(-1.6) 		259.4
(3) 		198.2
(-0.2) 		220.6
(1) 		248.5
(2.4) 		143.4
(-3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176069_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7481
Sequence Type Exemplar sequence
Representative Public ID C07H6.3 NCBI
Target Description C07H6.3 /REP_DB=WormBase Gene ID /WP=CE01153 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066248 NCBI Caenorhabditis elegans C07H6.3 (C07H6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000039497 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7508115:7515085:1 11/11 None
SNAP00000039491 ENSEMBL cdna:SNAP chromosome:CEL140:III:7510303:7515085:1 11/11 None
C07H6.3.2 ENSEMBL cdna:known chromosome:CEL140:III:7508115:7515205:1 gene:C07H6.3 11/11 None
C07H6.3.1 ENSEMBL cdna:known chromosome:CEL140:III:7508115:7515420:1 gene:C07H6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7508112-7515083(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07H6.3
Entrez Gene 176064 Entrez gene
SwissProt Q95YF0 EMBL-EBI
WormBase CE29074 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18632_AT CLIP-associating protein (CLASP) -related at
ATH1-121501:265576_AT CLIP-associating protein (CLASP) -related at
ATH1-121501:265315_AT CLIP-associating protein (CLASP) -related at
DROSOPHILA_2:1639806_AT chromosome bows dm
HG-U133_PLUS_2:212752_AT cytoplasmic linker associated protein 1 hs
HG-U133A_2:212752_AT cytoplasmic linker associated protein 1 hs
HG-U133A:212752_AT cytoplasmic linker associated protein 1 hs
HU35KSUBB:RC_R55719_AT cytoplasmic linker associated protein 1 hs
HU35KSUBB:RC_F10741_AT cytoplasmic linker associated protein 1 hs
U133_X3P:HS.11238.0.S1_3P_AT cytoplasmic linker associated protein 1 hs
HG-U95AV2:39838_AT cytoplasmic linker associated protein 1 hs
HG-U133_PLUS_2:240757_AT Cytoplasmic linker associated protein 1 hs
HG-U133B:240757_AT Cytoplasmic linker associated protein 1 hs
HG-U133_PLUS_2:240939_X_AT Cytoplasmic linker associated protein 1 hs
HG-U133B:240939_X_AT Cytoplasmic linker associated protein 1 hs
HG-U95B:46966_AT Cytoplasmic linker associated protein 1 hs
HG-U95B:59812_AT Cytoplasmic linker associated protein 1 hs
HG-U95E:79293_S_AT Cytoplasmic linker associated protein 1 hs
HG-U95E:79296_AT Cytoplasmic linker associated protein 1 hs
HU35KSUBC:RC_H49240_AT Cytoplasmic linker associated protein 1 hs
U133_X3P:HS.18214.0.A1_3P_AT Cytoplasmic linker associated protein 1 hs
HU35KSUBA:RC_AA004622_AT Cytoplasmic linker associated protein 1 hs
HU35KSUBC:RC_AA235058_AT Cytoplasmic linker associated protein 1 hs
U133_X3P:HS.189788.0.A1_3P_AT Cytoplasmic linker associated protein 1 hs
RG-U34B:RC_AA850743_AT cytoplasmic linker associated protein 1 (predicted) rn
RG-U34B:RC_AI044920_AT cytoplasmic linker associated protein 1 (predicted) rn
RAE230A:1375685_AT cytoplasmic linker associated protein 1 (predicted) rn
RAT230_2:1375685_AT cytoplasmic linker associated protein 1 (predicted) rn
RAE230B:1384015_AT cytoplasmic linker associated protein 1 (predicted) rn
RAT230_2:1384015_AT cytoplasmic linker associated protein 1 (predicted) rn
RAE230B:1381281_AT Cytoplasmic linker associated protein 1 (predicted) rn
RAT230_2:1381281_AT Cytoplasmic linker associated protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK85441 Hypothetical protein C07H6.3 [Caenorhabditis elegans] ref|NP_498649.1| C07H6.3 [Caenorhabditis elegans] 0.0
blast CAE64459 Hypothetical protein CBG09173 [Caenorhabditis briggsae] 0.0
blast CAA78472 Hypothetical protein R107.6 [Caenorhabditis elegans] ref|NP_499005.2| CLASP family of microtubule-binding proteins family member (cls-2) [Caenorhabditis elegans] sp|P32744|CLS2_CAEEL Kinetochore protein CLASP-2 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.DNA-binding domain of rap1 All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; DNA-binding domain of rap1 1.60000002384186
Pfam IPR010705 EMBL-EBI Mast, C-terminal 2.7E-84
Pfam IPR010705 EMBL-EBI Mast, C-terminal 2.7E-84
Sequence
Target Sequence 
>C. ELEGANS:176069_S_AT
aagaagcttgctctccgaattcttcagaaaatgtgcacagctcaagcgacaaagttgttc
gattcaacagaaattgcaatttcgaaagttcttcaatgtgcatgtacatctgatgacaac
acgatgggtgttgcagcagaagattgtcttcgaatcctggcttctcatctgcctcttacg
cgtgtcgttctgatctccaggcgaattttgagtcaagatgatgatgatcaacgtggtgtt
ctgattctgaaaatgttgacgagaatgttccaagatattgatattgaggagttacactta
attgtcaatgacgttgcaccatgttttgtcactgcctacgaatcaatgtcatctacagta
agaaaatgtgcagttttcggattagtcgccctggttcagagagttggaatgcaaagaatg
gagccacacttgagaactttaaatgccagtaaactgaacctaattgacctgtacgtgggc
cgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGCTTGCTCTCCGAATTCTTC 298 153 3685 Antisense
GAAAATGTGCACAGCTCAAGCGACA 129 353 3711 Antisense
AAGATTGTCTTCGAATCCTGGCTTC 32 157 3824 Antisense
TGTCGTTCTGATCTCCAGGCGAATT 448 557 3867 Antisense
AATTGTCAATGACGTTGCACCATGT 444 179 3984 Antisense
TTGCACCATGTTTTGTCACTGCCTA 705 701 3998 Antisense
GTCACTGCCTACGAATCAATGTCAT 621 465 4012 Antisense
GTGCAGTTTTCGGATTAGTCGCCCT 121 481 4052 Antisense
TAGTCGCCCTGGTTCAGAGAGTTGG 628 651 4067 Antisense
GAATGGAGCCACACTTGAGAACTTT 305 333 4100 Antisense
CCTAATTGACCTGTACGTGGGCCGC 66 267 4143 Antisense
Sequence Source Affymetrix Proprietary Database