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[176068_at]

Description Y41D4B.P /REP_DB=WormBase Gene ID /WP=CE21838 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 90      4grp_total > 43      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 100
(0.3)
A 		82.8
(-3)
A 		113.7
(3)
A 		83
(-3)
A 		31
B 40.7
(-3)
A 		142.7
(3)
A 		58.5
(-2)
A 		66.8
(-1.5)
A 		102
C 106.6
(1.2)
A 		121.5
(3)
A 		90.8
(-0.8)
A 		72.4
(-3)
A 		49
avr 82.4
(-1.8) 		115.7
(3) 		87.7
(-1) 		74.1
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 68.1
(-1.6)
A 		67
(-1.8)
A 		57.1
(-3)
A 		72.4
(-1.1)
A 		105.5
(3)
A 		72.1
(-1.1)
A 		48
B 82.1
(0.6)
A 		54.1
(-1.3)
A 		53.9
(-1.3)
A 		117.8
(3)
A 		28.5
(-3)
A 		93.7
(1.4)
A 		89
C 35.8
(-2.2)
A 		58.3
(-1.3)
A 		17.4
(-3)
A 		159.2
(3)
A 		73
(-0.6)
A 		88.3
(0)
A 		142
avr 62
(-1.4) 		59.8
(-1.6) 		42.8
(-3) 		116.5
(3) 		69
(-0.9) 		84.7
(0.4) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 36.4
(3)
A 		18
(-1.5)
A 		29.7
(1.3)
A 		12.1
(-3)
A 		24
B 13
(-3)
A 		35.2
(3)
A 		13.6
(-2.8)
A 		14.2
(-2.7)
A 		22
C 35.3
(3)
A 		34.9
(2.9)
A 		31.7
(2.1)
A 		12.2
(-3)
A 		23
avr 28.2
(2.6) 		29.4
(3) 		25
(1.4) 		12.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 12.5
(-3)
A 		23.8
(0.5)
A 		12.4
(-3)
A 		18.4
(-1.1)
A 		31.8
(3)
A 		17.6
(-1.4)
A 		19
B 28.6
(1.4)
A 		18
(-1.4)
A 		13.1
(-2.6)
A 		31.2
(2)
A 		11.6
(-3)
A 		34.9
(3)
A 		23
C 13.3
(-1.1)
A 		17.8
(-0.1)
A 		4.4
(-3)
A 		32
(3)
A 		23.6
(1.2)
A 		29.6
(2.5)
A 		28
avr 18.1
(-0.2) 		19.9
(0.4) 		10
(-3) 		27.2
(2.9) 		22.3
(1.2) 		27.4
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19309
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.P NCBI
Target Description Y41D4B.P /REP_DB=WormBase Gene ID /WP=CE21838 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y41D4B.P
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y41D4B.P Y41D4B.P /REP_DB=WormBase Gene ID /WP=CE21838 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1595309-1595851(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176068_AT
gcgacaccttcagaattgcagcgtctgatgagtcgaaaaacgccaaatcgtcgctgaaaa
ttcgattttttttcggtatttttcggcttttccgcttactttgtctcgtaattccacata
tagagattgttatcaatgacgacccaaactcggctgatttgtgtgaagaatcccatgcta
aactcgctctctccgggtattgggattcgccgtgtgctcacaaactccggcgctcccttc
acataaaacttctcgccgagaccggagacgggcgtcgtgccgtgttgtgtgaggcgatcg
aagaaatccgatgtctccatcatctgctcgacgtggtgtgccaccttgttcgccgccgct
tctgccgagtcggccgagcccaactccataaacgagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACACCTTCAGAATTGCAGCGTC 478 287 23 Antisense
GAAAAACGCCAAATCGTCGCTGAAA 157 355 57 Antisense
TTTCCGCTTACTTTGTCTCGTAATT 656 669 111 Antisense
AATGACGACCCAAACTCGGCTGATT 331 163 157 Antisense
GAAGAATCCCATGCTAAACTCGCTC 496 339 187 Antisense
GCTCTCTCCGGGTATTGGGATTCGC 241 299 208 Antisense
CGCCGTGTGCTCACAAACTCCGGCG 643 255 230 Antisense
TTCTCGCCGAGACCGGAGACGGGCG 425 693 272 Antisense
CGTCGTGCCGTGTTGTGTGAGGCGA 663 245 295 Antisense
GAAATCCGATGTCTCCATCATCTGC 442 361 325 Antisense
CCGAGCCCAACTCCATAAACGAGAC 587 263 396 Antisense
Sequence Source Affymetrix Proprietary Database