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[176067_at] 7TM chemoreceptor, srt family

Description Y5H2B.7 /REP_DB=WormBase Gene ID /WP=CE26223 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 11      6grp_cgc > 80      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 5.1
(-2.9)
A 		4.7
(-3)
A 		5.5
(-2.9)
A 		38
(3)
A 		33
B 7.2
(0.4)
A 		4.5
(-2.6)
A 		4.1
(-3)
A 		9.6
(3)
A 		6
C 7.2
(1.5)
A 		8.5
(3)
A 		3.2
(-3)
A 		4.5
(-1.5)
A 		5
avr 6.5
(-2) 		5.9
(-2.3) 		4.3
(-3) 		17.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 5.5
(-0.4)
A 		5.5
(-0.4)
A 		6.9
(3)
A 		4.7
(-2.3)
A 		5.8
(0.4)
A 		4.4
(-3)
A 		3
B 5.8
(2.4)
A 		3.4
(-2.6)
A 		6.1
(3)
A 		3.9
(-1.6)
A 		4.2
(-0.9)
A 		3.2
(-3)
A 		3
C 4.1
(-0.5)
A 		5.3
(2.7)
A 		5.4
(3)
A 		5.1
(2.2)
A 		3.4
(-2.5)
A 		3.2
(-3)
A 		2
avr 5.1
(0.6) 		4.7
(-0.4) 		6.1
(3) 		4.6
(-0.6) 		4.5
(-0.8) 		3.6
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.9
(-1.8)
A 		1
(-3)
A 		1.4
(-2.5)
A 		5.6
(3)
A 		5
B 2.3
(3)
A 		1.1
(-2.5)
A 		1
(-3)
A 		2
(1.6)
A 		1
C 2.4
(3)
A 		2.4
(3)
A 		1.1
(-1.9)
A 		0.8
(-3)
A 		2
avr 2.2
(0.8) 		1.5
(-1.9) 		1.2
(-3) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1
(-3)
A 		2
(3)
A 		1.5
(0)
A 		1.2
(-1.8)
A 		1.7
(1.2)
A 		1.1
(-2.4)
A 		1
B 2
(3)
A 		1.1
(-2.4)
A 		1.5
(0)
A 		1
(-3)
A 		1.7
(1.2)
A 		1.2
(-1.8)
A 		1
C 1.5
(2)
A 		1.6
(3)
A 		1.4
(1)
A 		1
(-3)
A 		1.1
(-2)
A 		1.1
(-2)
A 		1
avr 1.5
(1.8) 		1.6
(3) 		1.5
(1.8) 		1.1
(-3) 		1.5
(1.8) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14821
Sequence Type Exemplar sequence
Representative Public ID Y5H2B.7 NCBI
Target Description Y5H2B.7 /REP_DB=WormBase Gene ID /WP=CE26223 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071199 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-40) (srt-40) mRNA, complete cds. 11/11 None
SNAP00000028131 ENSEMBL cdna:SNAP chromosome:CEL140:V:2204858:2206109:-1 11/11 None
GENEFINDER00000028132 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2204858:2206109:-1 11/11 None
Y5H2B.7 ENSEMBL cdna:known chromosome:CEL140:V:2204858:2206109:-1 gene:Y5H2B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2204348-2206109(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-40
Ensembl Y5H2B.7
Entrez Gene 189365 Entrez gene
SwissProt Q966A1 EMBL-EBI
WormBase CE38009 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503600 Serpentine Receptor, class T family member (srt-40) [Caenorhabditis elegans] gb|AAK84622.2| Serpentine receptor, class t protein 40 [Caenorhabditis elegans] 1.0E-177
blast CAE75497 Hypothetical protein CBG23505 [Caenorhabditis briggsae] 1.0E-113
blast CAA99939 Hypothetical protein W04D2.2 [Caenorhabditis elegans] ref|NP_506129.1| Serpentine Receptor, class T family member (srt-39) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.9E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503600.2 7 38-60,72-94,109-131,152-174,201-223,244-265,275-297
Y5H2B.7 7 38-60,72-94,109-131,152-174,201-223,244-265,275-297
SNAP00000028131 7 38-60,72-94,109-131,152-174,201-223,244-265,275-297
GENEFINDER00000028132 7 38-60,72-94,109-131,152-174,201-223,244-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:176067_AT
tacatagttctcatgttcccagttctctacttcattttcttcatgttcaacaccccagtt
gtcttcagctccaaatactttgcctggatgtacacaccgctcatctttcctgatagaaac
ttggagtatttcaaccggccgcatactattaacaacttttcggttgtcacattgacatgt
atcgtttatacgccttttcgaattataattgcaaatcagttcaagaaacttattcatggc
gattcaccgcagcttcagaacgcgaaaacccaagtattcctccagtcgacttttatctgc
gcggtcaaccagtttggatctctgatctacgttatcatgaatgtcatagtagtcccaggc
tggctcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATAGTTCTCATGTTCCCAGTTC 507 643 457 Antisense
CATTTTCTTCATGTTCAACACCCCA 548 215 489 Antisense
CCAGTTGTCTTCAGCTCCAAATACT 101 273 511 Antisense
ATACTTTGCCTGGATGTACACACCG 85 25 531 Antisense
ATTTCAACCGGCCGCATACTATTAA 158 11 584 Antisense
GTATCGTTTATACGCCTTTTCGAAT 269 439 635 Antisense
CGATTCACCGCAGCTTCAGAACGCG 348 247 696 Antisense
CGCGAAAACCCAAGTATTCCTCCAG 186 243 717 Antisense
CTCCAGTCGACTTTTATCTGCGCGG 248 235 736 Antisense
ATCTGCGCGGTCAACCAGTTTGGAT 10 35 751 Antisense
TAGTAGTCCCAGGCTGGCTCATCAT 409 653 803 Antisense
Sequence Source Affymetrix Proprietary Database