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[176066_at]

Description T01B6.4 /REP_DB=WormBase Gene ID /WP=CE12884 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 5.3
(-3)
A 		12.5
(-2.9)
A 		5.2
(-3)
A 		732.6
(3)
P 		727
B 16.4
(-2.9)
A 		4.6
(-3)
A 		4.7
(-3)
A 		720.8
(3)
P 		716
C 2.2
(-3)
A 		3.5
(-3)
A 		6.1
(-3)
A 		806.4
(3)
P 		804
avr 8
(-3) 		6.9
(-3) 		5.3
(-3) 		753.3
(3) 		748

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 26.3
(-2.5)
A 		5.8
(-3)
A 		29.1
(-2.5)
A 		4.8
(-3)
A 		57.4
(-1.8)
A 		273.5
(3)
P 		269
B 3.9
(-3)
A 		4.5
(-2.9)
A 		2.3
(-3)
A 		2.9
(-3)
A 		70.4
(-1.2)
P 		225.6
(3)
P 		223
C 2.5
(-3)
A 		7.3
(-2.9)
A 		2.2
(-3)
A 		4.2
(-3)
A 		61.1
(-1.6)
P 		263.9
(3)
P 		262
avr 10.9
(-2.8) 		5.9
(-3) 		11.2
(-2.8) 		4
(-3) 		63
(-1.6) 		254.3
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 1.9
(-3)
A 		2.7
(-2.9)
A 		1.3
(-3)
A 		107.2
(3)
P 		106
B 5.2
(-2.8)
A 		1.1
(-3)
A 		1.1
(-3)
A 		153.6
(3)
P 		153
C 0.7
(-3)
A 		1
(-3)
A 		2.1
(-2.9)
A 		136
(3)
P 		135
avr 2.6
(-2.9) 		1.6
(-3) 		1.5
(-3) 		132.3
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 4.8
(-2.7)
A 		2
(-2.9)
A 		6.3
(-2.5)
A 		1.2
(-3)
A 		17.3
(-1.5)
A 		66.6
(3)
P 		65
B 1.4
(-2.9)
A 		1.5
(-2.9)
A 		0.6
(-3)
A 		0.8
(-3)
A 		28.6
(-1)
P 		84.1
(3)
P 		84
C 0.9
(-3)
A 		2.2
(-2.9)
A 		0.5
(-3)
A 		0.8
(-3)
A 		19.8
(-1.7)
P 		88.3
(3)
P 		88
avr 2.4
(-2.9) 		1.9
(-2.9) 		2.5
(-2.9) 		0.9
(-3) 		21.9
(-1.4) 		79.7
(3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18575
Sequence Type Exemplar sequence
Representative Public ID T01B6.4 NCBI
Target Description T01B6.4 /REP_DB=WormBase Gene ID /WP=CE12884 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076022 NCBI Caenorhabditis elegans T01B6.4 (T01B6.4) mRNA, complete cds. 11/11 None
T01B6.4 ENSEMBL cdna:known chromosome:CEL140:X:2337786:2338255:-1 gene:T01B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2337785-2338255(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01B6.4
Entrez Gene 187929 Entrez gene
SwissProt Q95ZK8 EMBL-EBI
WormBase CE12884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84565 Hypothetical protein T01B6.4 [Caenorhabditis elegans] ref|NP_508423.1| T01B6.4 [Caenorhabditis elegans] 4.0E-74
Sequence
Target Sequence 
>C. ELEGANS:176066_AT
cagttacaattctcagccttcttggtgccatcattgtggttaacgcaagttacagagcaa
ctgaatcacctgaacaatggcgccaacgcttcctaaagtcccaatcggaagatccttcct
ggttgcgatttccaaccccaccttctcgactcccacctttgtacgtagaaacggagaaac
aaatccgtgacagagcacttgcctacagagaaaagtacgagaaggagcatccacgaccaa
cagtggcagcggactcggatatcgatgtggagaaacgtcgcaaccttctcgttggacgtt
acggattccgcattggaaaacgattcgttggagaccagaatgattctccatcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTTACAATTCTCAGCCTTCTTGG 223 207 20 Antisense
GCCTTCTTGGTGCCATCATTGTGGT 273 281 35 Antisense
TGAACAATGGCGCCAACGCTTCCTA 48 573 90 Antisense
TTCCTGGTTGCGATTTCCAACCCCA 274 669 135 Antisense
ATCCGTGACAGAGCACTTGCCTACA 80 39 202 Antisense
ACGAGAAGGAGCATCCACGACCAAC 198 91 236 Antisense
CACGACCAACAGTGGCAGCGGACTC 224 199 251 Antisense
GGCAGCGGACTCGGATATCGATGTG 348 535 264 Antisense
ACGTCGCAACCTTCTCGTTGGACGT 236 93 294 Antisense
TCGTTGGACGTTACGGATTCCGCAT 395 603 308 Antisense
GAGACCAGAATGATTCTCCATCCTC 101 395 350 Antisense
Sequence Source Affymetrix Proprietary Database