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[176065_at]

Description Y41D4B.B /REP_DB=WormBase Gene ID /WP=CE21855 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 34      4grp_total > 03      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 105.6
(-3)
A 		115.7
(-2.8)
A 		139.4
(-2.3)
A 		414.4
(3)
P 		309
B 176.5
(3)
A 		147.6
(-0.9)
A 		131.5
(-3)
A 		153.5
(-0.1)
A 		45
C 164.1
(-0.9)
A 		111.9
(-2)
A 		61.2
(-3)
A 		354.5
(3)
P 		293
avr 148.7
(-1.8) 		125.1
(-2.6) 		110.7
(-3) 		307.5
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 109.1
(1.2)
A 		75.4
(-0.5)
A 		146.4
(3)
A 		23.9
(-3)
A 		69.2
(-0.8)
A 		80.7
(-0.2)
A 		123
B 87.2
(-0.3)
A 		113.3
(3)
A 		81.9
(-1)
A 		65.8
(-3)
A 		94.3
(0.6)
A 		77.7
(-1.5)
A 		48
C 109.4
(2.4)
A 		117.8
(3)
A 		100.4
(1.7)
A 		105.3
(2.1)
A 		57.1
(-1.5)
A 		37.5
(-3)
A 		80
avr 101.9
(2) 		102.2
(2) 		109.6
(3) 		65
(-3) 		73.5
(-1.9) 		65.3
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 38.4
(-0.8)
A 		25.1
(-3)
A 		36.4
(-1.1)
A 		60.7
(3)
P 		36
B 56.3
(3)
A 		36.5
(-1.6)
A 		30.5
(-3)
A 		32.7
(-2.5)
A 		26
C 54.3
(2.1)
A 		32.2
(-1.3)
A 		21.3
(-3)
A 		59.8
(3)
P 		39
avr 49.7
(2.6) 		31.3
(-2.5) 		29.4
(-3) 		51.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 20.1
(0.3)
A 		26.8
(1.8)
A 		31.9
(3)
A 		6.1
(-3)
A 		20.9
(0.4)
A 		19.6
(0.1)
A 		26
B 30.3
(0.7)
A 		37.7
(2.8)
A 		19.9
(-2.3)
A 		17.4
(-3)
A 		38.3
(3)
A 		29
(0.3)
A 		21
C 40.6
(3)
A 		35.9
(2)
A 		25.6
(-0.2)
A 		21.2
(-1.2)
A 		18.5
(-1.7)
A 		12.6
(-3)
A 		28
avr 30.3
(2) 		33.5
(3) 		25.8
(0.5) 		14.9
(-3) 		25.9
(0.5) 		20.4
(-1.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19185
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.B NCBI
Target Description Y41D4B.B /REP_DB=WormBase Gene ID /WP=CE21855 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y41D4B.B
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y41D4B.B Y41D4B.B /REP_DB=WormBase Gene ID /WP=CE21855 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:176065_AT
tttgtctccagcgaattgccgatttgtcggaatttttttttttcggcaaattgtcaagtt
gccgttccagaaattttcgacaaattcggcaagtcggaaaattgccggtttgccgatttg
gcgggaaatttcagttccggcactttgccgatttgccggaaatgttcattttcggcaaat
tgtcaatttgccgttccgaaagttttcgacaaatcggaaaattgccggattgctgatttg
cctgaaattttcattttcaccaaattgttaattttccggaatttttcgacgagttcggca
aaacggcaatttgccggtttgccgatttgccggaaattttcatttttggaaaattgtcat
tttgccgtttggggtaggcaactttctgccaaactttgcttacttgcaacttcccgccaa
acttttgcacattcctgccaacatttagatgttgctgagccttctttcccacttgctgcc
actacgtggcaacttcctgccaacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTCTCCAGCGAATTGCCGATTT 533 665 85 Antisense
ATTGTCAAGTTGCCGTTCCAGAAAT 477 3 134 Antisense
GGCGGGAAATTTCAGTTCCGGCACT 515 503 204 Antisense
ATTGTCAATTTGCCGTTCCGAAAGT 478 3 263 Antisense
ATTGCCGGATTGCTGATTTGCCTGA 661 5 305 Antisense
ATTGTCATTTTGCCGTTTGGGGTAG 287 3 437 Antisense
GGCAACTTTCTGCCAAACTTTGCTT 269 535 461 Antisense
AACTTTTGCACATTCCTGCCAACAT 138 139 504 Antisense
TTAGATGTTGCTGAGCCTTCTTTCC 33 681 529 Antisense
CCCACTTGCTGCCACTACGTGGCAA 606 257 552 Antisense
TACGTGGCAACTTCCTGCCAACAAC 648 647 567 Antisense
Sequence Source Affymetrix Proprietary Database