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[176064_s_at]

Description R05G9R.A /REP_DB=WormBase Gene ID /WP=CE21111 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 81      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 7.2
(-3)
A 		53.9
(3)
A 		16.9
(-1.8)
A 		10
(-2.6)
A 		47
B 4.8
(-3)
A 		6.6
(-2.8)
A 		56.8
(3)
P 		4.8
(-3)
A 		52
C 9.8
(-2.4)
A 		6.3
(-3)
A 		38.9
(3)
A 		18.4
(-0.8)
A 		33
avr 7.3
(-3) 		22.3
(-0) 		37.5
(3) 		11.1
(-2.2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 5.3
(-3)
A 		38.2
(-2.4)
A 		66.5
(-1.9)
A 		338.9
(3)
P 		236.2
(1.2)
P 		29.6
(-2.6)
A 		334
B 18
(-3)
A 		41
(-2.5)
A 		115
(-1.1)
P 		318.1
(3)
P 		254.8
(1.7)
P 		61.7
(-2.1)
P 		300
C 27.7
(-3)
A 		69.3
(-2.3)
A 		70.4
(-2.3)
P 		369.9
(3)
P 		163.8
(-0.6)
P 		67.3
(-2.3)
P 		342
avr 17
(-3) 		49.5
(-2.4) 		84
(-1.8) 		342.3
(3) 		218.3
(0.7) 		52.9
(-2.3) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.6
(-2.4)
A 		11.7
(3)
A 		4.4
(-1.3)
A 		1.5
(-3)
A 		10
B 1.5
(-2.8)
A 		1.6
(-2.7)
A 		13.2
(3)
P 		1
(-3)
A 		12
C 3.3
(-2.2)
A 		1.8
(-3)
A 		13.5
(3)
A 		3.1
(-2.3)
A 		12
avr 2.5
(-2.6) 		5
(-0.8) 		10.4
(3) 		1.9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 1
(-3)
A 		13.6
(-2.1)
A 		14.5
(-2)
A 		85.9
(3)
P 		71.3
(2)
P 		7.2
(-2.6)
A 		85
B 6.3
(-3)
A 		13.6
(-2.5)
A 		27.9
(-1.7)
P 		84.2
(1.8)
P 		103.5
(3)
P 		23
(-2)
P 		97
C 10.3
(-3)
A 		21.1
(-2)
A 		17.9
(-2.3)
P 		74.4
(3)
P 		53
(1)
P 		22.5
(-1.9)
P 		64
avr 5.9
(-3) 		16.1
(-2.2) 		20.1
(-1.9) 		81.5
(3) 		75.9
(2.6) 		17.6
(-2.1) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176064_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18893
Sequence Type Exemplar sequence
Representative Public ID R05G9R.A NCBI
Target Description R05G9R.A /REP_DB=WormBase Gene ID /WP=CE21111 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062915 NCBI Caenorhabditis elegans R05G9R.1 (R05G9R.1) mRNA, complete cds. 11/11 None
R05G9R.1 ENSEMBL cdna:known chromosome:CEL140:II:6509503:6512926:-1 gene:R05G9R.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016527 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6509649-6511416(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05G9R.1
Entrez Gene 174075 Entrez gene
SwissProt Q965Y7 EMBL-EBI
WormBase CE36001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68394 Hypothetical protein R05G9R.1 [Caenorhabditis elegans] ref|NP_495316.2| R05G9R.1 [Caenorhabditis elegans] 0.0
blast CAE59335 Hypothetical protein CBG02680 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176064_S_AT
tttaataccactaccaacggcggcttatacgtttggatctgttgatgtaactccatcacc
atcaataagcacaactccactggaagatcaactgtggccattgccaataagaaaaagaca
tcggctgaaattaatgggagcgaaaatgagagaaaaaacgaaaccaattgtcattttgcc
aatgaacaagaaaaatgccaaaaagatggagcaatacaagcggacactacaaactggatg
ccaaagatatgataaatgtcttcggaaagaagttgaaatgcgaattaaatgtgctcaacc
atacccgacgccatatgataaatgctcttctcaactgcttccactttataaaaattctaa
atgttatgcaccgaagaaaatgcgtgcacaggaagtgatatgtgagaatctcgaagtttg
gtcatcatactgtaggcaactagaactatgttgtccagccaaggatcgatgcgactcaga
agccgaagacgatcatgttggtactcgcttacgtcttctagaaaaatcgttttcacttcg
tgcagctgcctgtcaattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAATACCACTACCAACGGCGGCT 42 671 402 Antisense
CGGCGGCTTATACGTTTGGATCTGT 275 241 419 Antisense
TAACTCCATCACCATCAATAAGCAC 395 639 449 Antisense
GGAAGATCAACTGTGGCCATTGCCA 551 531 483 Antisense
AGCGGACACTACAAACTGGATGCCA 454 71 620 Antisense
TTAAATGTGCTCAACCATACCCGAC 180 683 686 Antisense
TGATAAATGCTCTTCTCAACTGCTT 332 565 717 Antisense
GATGCGACTCAGAAGCCGAAGACGA 326 415 869 Antisense
GATCATGTTGGTACTCGCTTACGTC 198 421 892 Antisense
AAAATCGTTTTCACTTCGTGCAGCT 626 131 924 Antisense
TTCGTGCAGCTGCCTGTCAATTCAA 613 695 938 Antisense
Sequence Source Affymetrix Proprietary Database