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[176063_at]

Description Y41D4B.A /REP_DB=WormBase Gene ID /WP=CE21854 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 29      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 72.4
(-0.4)
A 		11.8
(-2.9)
A 		9.6
(-3)
A 		153.7
(3)
A 		144
B 94.2
(3)
A 		12.6
(-3)
A 		41.7
(-0.9)
A 		37.1
(-1.2)
A 		82
C 22.5
(-2.7)
A 		18.8
(-2.8)
A 		15
(-3)
A 		151.8
(3)
A 		137
avr 63
(-0.1) 		14.4
(-3) 		22.1
(-2.5) 		114.2
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 20.6
(-2.1)
A 		67.2
(1.8)
A 		9.3
(-3)
A 		15.6
(-2.5)
A 		82.1
(3)
A 		53.8
(0.7)
A 		73
B 52.5
(2.5)
A 		13.3
(-3)
A 		25.5
(-1.3)
A 		16.2
(-2.6)
A 		56.1
(3)
A 		16.9
(-2.5)
A 		43
C 77.2
(3)
A 		54.4
(1.1)
A 		15.4
(-2.1)
A 		18.4
(-1.8)
A 		61.9
(1.7)
A 		4
(-3)
A 		73
avr 50.1
(1) 		45
(0.4) 		16.7
(-3) 		16.7
(-3) 		66.7
(3) 		24.9
(-2) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 26.4
(3)
A 		2.6
(-3)
A 		2.5
(-3)
A 		22.5
(2)
A 		24
B 30
(3)
A 		3.1
(-3)
A 		9.7
(-1.5)
A 		7.9
(-1.9)
A 		27
C 7.4
(-2.4)
A 		5.4
(-2.9)
A 		5.2
(-3)
A 		25.6
(3)
A 		20
avr 21.3
(3) 		3.7
(-3) 		5.8
(-2.3) 		18.7
(2.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.8
(-2.5)
A 		23.9
(2.8)
A 		2
(-3)
A 		3.9
(-2.5)
A 		24.8
(3)
A 		13.1
(-0.1)
A 		23
B 18.3
(1.5)
A 		4.4
(-3)
A 		6.2
(-2.4)
A 		4.3
(-3)
A 		22.8
(3)
A 		6.3
(-2.4)
A 		19
C 28.6
(3)
A 		16.6
(0.4)
A 		3.9
(-2.4)
A 		3.7
(-2.5)
A 		20
(1.1)
A 		1.3
(-3)
A 		27
avr 16.9
(1.2) 		15
(0.6) 		4
(-3) 		4
(-3) 		22.5
(3) 		6.9
(-2.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19237
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.A NCBI
Target Description Y41D4B.A /REP_DB=WormBase Gene ID /WP=CE21854 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067721(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067721 NCBI Caenorhabditis elegans Y41D4B.24 (Y41D4B.24) mRNA, complete cds. 9/11 None
GENEFINDER00000005538 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1676718:1682524:-1 9/11 None
Y41D4B.24 ENSEMBL cdna:known chromosome:CEL140:IV:1678917:1680764:-1 gene:Y41D4B.24 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1678733-1680139(-) 86.92 94.59
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.24
Entrez Gene 189828 Entrez gene
SwissProt Q95XZ9 EMBL-EBI
WormBase CE32527 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE67977 Hypothetical protein CBG13583 [Caenorhabditis briggsae] 1.0E-146
blast AAK68476 Hypothetical protein Y41D4B.24 [Caenorhabditis elegans] ref|NP_500122.2| Y41D4B.24 [Caenorhabditis elegans] 1.0E-117
blast AAK68476 Hypothetical protein Y41D4B.24 [Caenorhabditis elegans] ref|NP_500122.2| Y41D4B.24 [Caenorhabditis elegans] 1.0E-115
blast CAE67977 Hypothetical protein CBG13583 [Caenorhabditis briggsae] 1.0E-103
blast CAA98450 Hypothetical protein F32D8.10 [Caenorhabditis elegans] ref|NP_505783.1| F32D8.10 [Caenorhabditis elegans] 3.0E-58
blast CAA98450 Hypothetical protein F32D8.10 [Caenorhabditis elegans] ref|NP_505783.1| F32D8.10 [Caenorhabditis elegans] 6.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500122.2 5 23-45,65-87,108-127,164-186,220-242
Y41D4B.24 5 23-45,65-87,108-127,164-186,220-242
GENEFINDER00000005538 7 123-145,158-180,200-222,243-262,299-321,355-377,392-414
Sequence
Target Sequence 
>C. ELEGANS:176063_AT
gatccccatattgacagtatcccatattgcgatgacgtcatcctcctttcttattgttgc
ggcctcgtttgaacgttactgtgccacgctaaactctccgtatcttagatttgcacagaa
aaatcgatcattcattgcgctatgtgcagtatttcttggagttgtgagcaaagggaccat
ttccattgagtttgagctcgtgcaccatgagcaatgtgagggtcaaatgatggcaaccac
catgaaattccgcccgttcgtactggaaactcaataccattaccttttccgtttctggta
ccggaactttgtgacagtctttgccccattctttatccttctctacctgaacgtccgaat
tgtgaaagcactgacgacctacacaactgccacagtatgccttgtcactaatgggaatac
tgaggatttgcagaagagaaaggcaagtgcccgtgctgctactaggacactggtgatgct
tcaccagtttatcttctggggcaagggtgagcgacaattgccgctcggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCCCATATTGACAGTATCCCAT 343 417 207 Antisense
TTGTTGCGGCCTCGTTTGAACGTTA 99 705 260 Antisense
GAACGTTACTGTGCCACGCTAAACT 164 347 277 Antisense
TGGCAACCACCATGAAATTCCGCCC 502 545 437 Antisense
GAACTTTGTGACAGTCTTTGCCCCA 103 349 510 Antisense
TTCTCTACCTGAACGTCCGAATTGT 57 689 545 Antisense
TGAAAGCACTGACGACCTACACAAC 360 573 569 Antisense
GCCACAGTATGCCTTGTCACTAATG 137 279 595 Antisense
CCCGTGCTGCTACTAGGACACTGGT 669 259 656 Antisense
GTGATGCTTCACCAGTTTATCTTCT 161 485 679 Antisense
GGTGAGCGACAATTGCCGCTCGGCA 345 499 712 Antisense
Sequence Source Affymetrix Proprietary Database