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[176062_s_at]

Description E01A2.4 /REP_DB=WormBase Gene ID /WP=CE24871 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 68      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 78.3
(-3)
P 		102.3
(-0.5)
P 		79.5
(-2.9)
A 		135.9
(3)
P 		58
B 74.9
(0.1)
P 		69.5
(-0.5)
P 		44
(-3)
P 		104.2
(3)
P 		60
C 93.6
(0.7)
P 		44.8
(-3)
P 		80.1
(-0.3)
P 		123.6
(3)
P 		79
avr 82.3
(-1.4) 		72.2
(-2.5) 		67.9
(-3) 		121.2
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 74.3
(0.4)
P 		39
(-3)
A 		48.9
(-2.1)
A 		56.4
(-1.3)
A 		51.3
(-1.8)
P 		102
(3)
P 		63
B 61.3
(-1.3)
P 		58.1
(-1.5)
P 		70.2
(-0.7)
A 		36.5
(-3)
P 		53.7
(-1.8)
P 		125.3
(3)
P 		89
C 80
(-0.5)
P 		66.9
(-1.6)
P 		62.8
(-2)
A 		51.4
(-3)
M 		67.3
(-1.6)
M 		119.7
(3)
P 		68
avr 71.9
(-0.9) 		54.7
(-2.4) 		60.6
(-1.9) 		48.1
(-3) 		57.4
(-2.2) 		115.7
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 28.5
(3)
P 		22.2
(-1.4)
P 		20.8
(-2.4)
A 		19.9
(-3)
P 		9
B 23.9
(3)
P 		17.2
(0.1)
P 		10.2
(-3)
P 		22.2
(2.3)
P 		14
C 31
(3)
P 		12.9
(-3)
P 		27.9
(2)
P 		20.8
(-0.4)
P 		18
avr 27.8
(3) 		17.4
(-3) 		19.6
(-1.7) 		21
(-0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 13.7
(-1.7)
P 		13.9
(-1.6)
A 		10.7
(-3)
A 		14.3
(-1.5)
A 		15.5
(-1)
P 		24.8
(3)
P 		14
B 21.3
(-1.1)
P 		19.3
(-1.4)
P 		17
(-1.8)
A 		9.7
(-3)
P 		21.8
(-1)
P 		46.7
(3)
P 		37
C 29.7
(0.9)
P 		20.4
(-1)
P 		16
(-1.9)
A 		10.3
(-3)
M 		21.8
(-0.7)
M 		40.1
(3)
P 		30
avr 21.6
(-0.6) 		17.9
(-1.5) 		14.6
(-2.3) 		11.4
(-3) 		19.7
(-1.1) 		37.2
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176062_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1443
Sequence Type Exemplar sequence
Representative Public ID E01A2.4 NCBI
Target Description E01A2.4 /REP_DB=WormBase Gene ID /WP=CE24871 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058900 NCBI Caenorhabditis elegans E01A2.4 (E01A2.4) mRNA, complete cds. 11/11 None
SNAP00000008532 ENSEMBL cdna:SNAP chromosome:CEL140:I:4129631:4132193:-1 11/11 None
GENEFINDER00000008595 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4129631:4132410:-1 11/11 None
E01A2.4 ENSEMBL cdna:known chromosome:CEL140:I:4129590:4132293:-1 gene:E01A2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4129630-4132193(-) 88.51 100.0
Public Domain and Genome References
Gene Title
Ensembl E01A2.4
Entrez Gene 171995 Entrez gene
SwissProt Q966L6 EMBL-EBI
WormBase CE24871 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15897_S_AT expressed protein at
ATH1-121501:255495_AT expressed protein at
DROSOPHILA_2:1637260_AT dm
DROSGENOME1:150713_AT dm
CHICKEN:GGAAFFX.12894.1.S1_AT similar to hypothetical protein FLJ22626 gga
HG-U133_PLUS_2:223439_AT NF-kappaB activating protein hs
HG-U133B:223439_AT NF-kappaB activating protein hs
HU35KSUBA:AA136382_S_AT NF-kappaB activating protein hs
HU35KSUBA:RC_AA281743_R_AT NF-kappaB activating protein hs
U133_X3P:G12654240_3P_AT NF-kappaB activating protein hs
HG-U95B:46111_F_AT NF-kappaB activating protein hs
HG-U95B:46112_R_AT NF-kappaB activating protein hs
HG-U95E:72339_AT NF-kappaB activating protein hs
HG-U95D:67426_AT NF-kappaB activating protein hs
HG-U95D:72401_AT NF-kappaB activating protein hs
MOUSE430_2:1419763_AT RIKEN cDNA 2610020O08 gene mm
MOUSE430A_2:1419763_AT RIKEN cDNA 2610020O08 gene mm
MOE430A:1419763_AT RIKEN cDNA 2610020O08 gene mm
MG-U74BV2:106465_AT RIKEN cDNA 2610020O08 gene mm
MG-U74BV2:164064_AT RIKEN cDNA 2610020O08 gene mm
MG-U74CV2:167173_AT RIKEN cDNA 2610020O08 gene mm
MOE430A:1449589_X_AT RIKEN cDNA 2610020O08 gene mm
MOUSE430A_2:1449589_X_AT RIKEN cDNA 2610020O08 gene mm
MOUSE430_2:1449589_X_AT RIKEN cDNA 2610020O08 gene mm
MOE430B:1435662_AT RIKEN cDNA 2610020O08 gene mm
MOUSE430_2:1435662_AT RIKEN cDNA 2610020O08 gene mm
MU19KSUBC:TC35045_AT RIKEN cDNA 2610020O08 gene, mRNA (cDNA clone MGC:25785 IMAGE:4019392) mm
RG-U34B:RC_AI012804_AT nuclear NF-kappaB activating protein rn
RG-U34C:RC_AI172058_AT nuclear NF-kappaB activating protein rn
RAE230B:1382109_AT nuclear NF-kappaB activating protein rn
RAT230_2:1382109_AT nuclear NF-kappaB activating protein rn
RAE230B:1385495_AT nuclear NF-kappaB activating protein rn
RAT230_2:1385495_AT nuclear NF-kappaB activating protein rn
RAE230B:1384761_AT Nuclear NF-kappaB activating protein rn
RAT230_2:1384761_AT Nuclear NF-kappaB activating protein rn
RG-U34B:RC_AI030080_AT Nuclear NF-kappaB activating protein rn
Protein Similarities
Method ID Description E-Value
blast AAK85461 Hypothetical protein E01A2.4 [Caenorhabditis elegans] ref|NP_491301.1| E01A2.4 [Caenorhabditis elegans] 3.0E-65
blast AAK85461 Hypothetical protein E01A2.4 [Caenorhabditis elegans] ref|NP_491301.1| E01A2.4 [Caenorhabditis elegans] 4.0E-65
blast CAE66719 Hypothetical protein CBG12065 [Caenorhabditis briggsae] 6.0E-57
blast AAF56669 CG6066-PA [Drosophila melanogaster] ref|NP_651538.1| CG6066-PA [Drosophila melanogaster] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR009269 EMBL-EBI Protein of unknown function DUF926 2.7E-84
Pfam IPR009269 EMBL-EBI Protein of unknown function DUF926 2.7E-84
Sequence
Target Sequence 
>C. ELEGANS:176062_S_AT
gagaagagctcgtcgtgagcaacgaaagaaagaacgtgctgagctgaagagaaagattaa
taatcgttctgatactgaagaagaatgggaagaaaagcagtctgaaaagattgttggcac
gattggaacatggaaagaaggaagtatgtcaccgacgccaattctcccagaacatattaa
acaacgtgatcaaggtggtggttatgatgttgagaagcccggaaactatggtaaagatct
actaaaaggagagggcgccggaatggctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGAGCTCGTCGTGAGCAACGA 425 391 987 Antisense
GAAAGAAAGAACGTGCTGAGCTGAA 368 359 1010 Antisense
GATTAATAATCGTTCTGATACTGAA 378 431 1041 Antisense
AGTCTGAAAAGATTGTTGGCACGAT 633 61 1085 Antisense
TTGGCACGATTGGAACATGGAAAGA 445 709 1100 Antisense
AGGAAGTATGTCACCGACGCCAATT 511 53 1125 Antisense
ACGCCAATTCTCCCAGAACATATTA 376 89 1141 Antisense
TAAACAACGTGATCAAGGTGGTGGT 514 633 1164 Antisense
GTGGTTATGATGTTGAGAAGCCCGG 555 489 1184 Antisense
AGCCCGGAAACTATGGTAAAGATCT 251 1 1202 Antisense
AAGGAGAGGGCGCCGGAATGGCTGC 294 161 1232 Antisense
Sequence Source Affymetrix Proprietary Database