[Home] | [Total List]

[176061_at]

Description ZK686.4 /REP_DB=WormBase Gene ID /WP=CE00458 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 94      6grp_total > 66      4grp_total > 19      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 560
1 2 3 4 range
A 459.9
(-0.1)
P 		378
(-1.6)
P 		304.3
(-3)
P 		622.9
(3)
P 		319
B 349.8
(-2.9)
P 		532.7
(-0.8)
P 		337.1
(-3)
P 		864.3
(3)
P 		527
C 506.2
(-0.5)
P 		476.3
(-1.3)
P 		414.6
(-3)
P 		638
(3)
P 		223
avr 438.6
(-1.5) 		462.3
(-1.1) 		352
(-3) 		708.4
(3) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 704
1 2 3 4 5 6 range
A 332.9
(-3)
P 		381
(-2.4)
P 		686.8
(1.1)
P 		455.9
(-1.6)
P 		390.4
(-2.3)
P 		850.9
(3)
P 		518
B 671.6
(0.7)
P 		379.4
(-3)
P 		671.1
(0.7)
P 		477.3
(-1.8)
P 		446.8
(-2.2)
P 		855.8
(3)
P 		476
C 440.7
(-2.3)
P 		364
(-3)
P 		442.2
(-2.3)
P 		482.4
(-1.9)
P 		402.8
(-2.7)
P 		1037
(3)
P 		673
avr 481.7
(-1.8) 		374.8
(-3) 		600
(-0.5) 		471.9
(-1.9) 		413.3
(-2.6) 		914.6
(3) 		540
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 167.4
(3)
P 		82
(-2.8)
P 		79.5
(-3)
P 		91.2
(-2.2)
P 		88
B 111.5
(-1.1)
P 		131.6
(0)
P 		78.1
(-3)
P 		184.2
(3)
P 		106
C 167.6
(3)
P 		136.9
(-0.1)
P 		144.5
(0.7)
P 		107.6
(-3)
P 		60
avr 148.8
(3) 		116.8
(-1) 		100.7
(-3) 		127.7
(0.4) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 61.4
(-3)
P 		135.5
(0)
P 		149.6
(0.6)
P 		115.6
(-0.8)
P 		117.8
(-0.7)
P 		207.2
(3)
P 		146
B 233.7
(0.3)
P 		126.3
(-3)
P 		163
(-1.9)
P 		126.4
(-3)
P 		181.5
(-1.3)
P 		319.1
(3)
P 		193
C 163.4
(-1.4)
P 		111.1
(-2.7)
P 		112.5
(-2.6)
P 		97
(-3)
P 		130.3
(-2.2)
P 		347.1
(3)
P 		250
avr 152.8
(-1.7) 		124.3
(-2.6) 		141.7
(-2) 		113
(-3) 		143.2
(-2) 		291.1
(3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6443
Sequence Type Exemplar sequence
Representative Public ID ZK686.4 NCBI
Target Description ZK686.4 /REP_DB=WormBase Gene ID /WP=CE00458 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066291 NCBI Caenorhabditis elegans ZK686.4 (ZK686.4) mRNA, complete cds. 11/11 None
SNAP00000038837 ENSEMBL cdna:SNAP chromosome:CEL140:III:7769138:7769889:-1 11/11 None
GENEFINDER00000038842 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7769138:7769889:-1 11/11 None
ZK686.4 ENSEMBL cdna:known chromosome:CEL140:III:7769138:7772482:-1 gene:ZK686.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7769135-7772480(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK686.4
Entrez Gene 176090 Entrez gene
SwissProt P34670 EMBL-EBI
WormBase CE00458 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258749_AT expressed protein at
CANINE:1591529_AT similar to zinc finger, matrin type 2 cfa
CANINE:1587488_AT similar to zinc finger, matrin type 2 cfa
CANINE_2:CFA.15119.2.A1_A_AT similar to zinc finger, matrin type 2 cfa
CANINE_2:CFAAFFX.9824.1.S1_AT similar to zinc finger, matrin type 2 cfa
DROSOPHILA_2:1630952_AT dm
DROSGENOME1:155075_AT dm
HUGENEFL:X97303_AT zinc finger, matrin type 2 hs
U133_X3P:HS.250655.3.A1_3P_X_AT zinc finger, matrin type 2 hs
U133_X3P:HS.250655.3.A1_3P_S_AT zinc finger, matrin type 2 hs
HG-U133_PLUS_2:224782_AT zinc finger, matrin type 2 hs
HG-U133B:224782_AT zinc finger, matrin type 2 hs
HG-U95E:80626_S_AT zinc finger, matrin type 2 hs
HG-U95E:91707_AT zinc finger, matrin type 2 hs
MOUSE430_2:1446079_AT zinc finger, matrin type 2 mm
MOE430B:1446079_AT zinc finger, matrin type 2 mm
MG-U74BV2:107543_S_AT zinc finger, matrin type 2 mm
MG-U74BV2:107544_R_AT zinc finger, matrin type 2 mm
MG-U74BV2:164502_R_AT zinc finger, matrin type 2 mm
MOE430A:1417536_AT zinc finger, matrin type 2 mm
MOUSE430A_2:1417536_AT zinc finger, matrin type 2 mm
MOUSE430_2:1417536_AT zinc finger, matrin type 2 mm
MOE430A:1417537_AT zinc finger, matrin type 2 mm
MOUSE430A_2:1417537_AT zinc finger, matrin type 2 mm
MOUSE430_2:1417537_AT zinc finger, matrin type 2 mm
MU19KSUBA:TC16117_AT Zinc finger, matrin type 2, mRNA (cDNA clone MGC:28387 IMAGE:4022326) mm
RG-U34B:RC_AI058960_AT similar to histidyl-tRNA synthetase-like (predicted) rn
RAE230A:1373721_AT similar to histidyl-tRNA synthetase-like (predicted) rn
RAT230_2:1373721_AT similar to histidyl-tRNA synthetase-like (predicted) rn
RAE230B:1378050_AT similar to histidyl-tRNA synthetase-like (predicted) rn
RAT230_2:1378050_AT similar to histidyl-tRNA synthetase-like (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28220 Hypothetical protein ZK686.4 [Caenorhabditis elegans] ref|NP_498692.1| ZK686.4 [Caenorhabditis elegans] sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686.4 in chromosome III 1.0E-179
blast AAA28220 Hypothetical protein ZK686.4 [Caenorhabditis elegans] ref|NP_498692.1| ZK686.4 [Caenorhabditis elegans] sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686.4 in chromosome III 2.0E-75
blast CAE57186 Hypothetical protein CBG00030 [Caenorhabditis briggsae] 9.0E-71
blast CAE57186 Hypothetical protein CBG00030 [Caenorhabditis briggsae] 1.0E-68
blast AAH77058 MGC90011 protein [Xenopus tropicalis] ref|NP_001005119.1| MGC90011 protein [Xenopus tropicalis] 9.0E-36
Sequence
Target Sequence 
>C. ELEGANS:176061_AT
aaaaagaatactccttggctgcgcaacagcgtttgctcgatgagaaggaagctgaagata
ttcgacttggaaagaaaaagaaagatgaaccgaaggttaaacgagagatgttacaagcga
gagaatataaggtcgacttggattcgaaagttggaaaatctgtagtcatcactaaggcaa
cgccgtcggcggaaactggaggattctattgtgacgtttgcgattgcgtcgtgaaagatt
ccatcaactttttggatcacattaatggaaaaaatcatcaaagaaacatcggaatgtcta
tgaaaactaaaaagagcacagttgctgatgtcagagaacgattcaaattaatgaaagata
aaaaagaaagagaaaagaaagaggcacaagtggaacagttgctagaggatgttcaagaag
aagaggcgagaatggctgatttcaaaaaggacaagaaaacagacaacagaaaacgaaaga
gggacaccagaaaagatgaagaagaagacgacgacgaagacgatagcggacttgatcctg
aaattcgcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGAATACTCCTTGGCTGCGCA 379 129 647 Antisense
CTGCGCAACAGCGTTTGCTCGATGA 627 235 665 Antisense
TAGTCATCACTAAGGCAACGCCGTC 109 655 809 Antisense
GCCGTCGGCGGAAACTGGAGGATTC 21 283 828 Antisense
GGAGGATTCTATTGTGACGTTTGCG 118 517 844 Antisense
GTGACGTTTGCGATTGCGTCGTGAA 246 483 857 Antisense
GCGTCGTGAAAGATTCCATCAACTT 696 287 872 Antisense
AGAGCACAGTTGCTGATGTCAGAGA 544 69 959 Antisense
GAAGAGGCGAGAATGGCTGATTTCA 22 339 1066 Antisense
GACGAAGACGATAGCGGACTTGATC 54 381 1159 Antisense
CGGACTTGATCCTGAAATTCGCGCA 336 243 1173 Antisense
Sequence Source Affymetrix Proprietary Database