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[176059_at]

Description C29E4.9 /REP_DB=WormBase Gene ID /WP=CE00091 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 12      4grp_high_8_8 > 49      6grp_total > 22      4grp_total > 53      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 319.1
(3)
P 		200.8
(0.2)
P 		272.3
(1.9)
A 		61.9
(-3)
A 		257
B 326.3
(2.6)
P 		341.7
(3)
A 		300.8
(2)
P 		98.7
(-3)
A 		243
C 332.7
(3)
P 		276.9
(0.8)
P 		182.9
(-3)
P 		182.8
(-3)
P 		150
avr 326
(3) 		273.1
(1.5) 		252
(0.9) 		114.5
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 285.3
(3)
P 		261.4
(2.2)
M 		277.5
(2.7)
P 		179.9
(-0.7)
P 		181.7
(-0.7)
A 		116.1
(-3)
A 		169
B 323
(3)
P 		259.8
(0.7)
P 		240.3
(0)
P 		216.6
(-0.9)
P 		157.6
(-3)
P 		175.7
(-2.3)
P 		165
C 179.2
(-1.7)
P 		278.1
(2.9)
P 		280.8
(3)
P 		268.9
(2.4)
P 		175.5
(-1.9)
P 		151
(-3)
M 		130
avr 262.5
(2.8) 		266.4
(3) 		266.2
(3) 		221.8
(0.7) 		171.6
(-1.8) 		147.6
(-3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 116.2
(3)
P 		43.6
(-1.1)
P 		71.2
(0.5)
A 		9.1
(-3)
A 		107
B 104
(3)
P 		84.4
(1.6)
A 		69.7
(0.5)
P 		21
(-3)
A 		83
C 110.1
(3)
P 		79.6
(0.7)
P 		63.7
(-0.5)
P 		30.8
(-3)
P 		79
avr 110.1
(3) 		69.2
(0.3) 		68.2
(0.2) 		20.3
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 52.6
(-0.7)
P 		93
(3)
M 		60.4
(-0)
P 		45.6
(-1.4)
P 		54.8
(-0.5)
A 		28.3
(-3)
A 		65
B 112.4
(3)
P 		86.5
(0.2)
P 		58.4
(-2.9)
P 		57.4
(-3)
P 		64
(-2.3)
P 		65.5
(-2.1)
P 		55
C 66.4
(-0.2)
P 		84.9
(3)
P 		71.5
(0.7)
P 		54.1
(-2.4)
P 		56.8
(-1.9)
P 		50.6
(-3)
M 		34
avr 77.1
(1.4) 		88.1
(3) 		63.4
(-0.7) 		52.4
(-2.4) 		58.5
(-1.4) 		48.1
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6502
Sequence Type Exemplar sequence
Representative Public ID C29E4.9 NCBI
Target Description C29E4.9 /REP_DB=WormBase Gene ID /WP=CE00091 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066331 NCBI Caenorhabditis elegans C29E4.11 (C29E4.11) mRNA, complete cds. 11/11 None
C29E4.11 ENSEMBL cdna:known chromosome:CEL140:III:7955773:7958029:-1 gene:C29E4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7955742-7958027(-) 98.53 100.0
Public Domain and Genome References
Gene Title
Ensembl C29E4.11
Entrez Gene 259871 Entrez gene
SwissProt P34347 EMBL-EBI
WormBase CE29197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27956 Hypothetical protein C29E4.11 [Caenorhabditis elegans] ref|NP_498732.1| C29E4.11 [Caenorhabditis elegans] sp|P34347|YK6B_CAEEL Hypothetical protein C29E4.11 in chromosome III 5.0E-93
Sequence
Target Sequence 
>C. ELEGANS:176059_AT
ttgatttgatatttccaccaccacctcagtctccaagtaaactgcatccgacacaaaatc
atatattgcccccagaaccattgaatagagattttggagatacaagaaaaaatcacaaga
aagctcagcccagacgcacaacaaaagctccttcaacatcttctccaacaattcatgatc
ggcagaccccacctcgaccaactacacctaaatcgccaacagaaaagttgcttccaattt
atcacaaatttgctgatggaactgaagtcgtgaatccagctgcttatgctcaacgtggat
tcggatgggtaaaacaaaataatacagcacgagtctcttgggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATTTGATATTTCCACCACCACC 23 707 23 Antisense
ACCACCTCAGTCTCCAAGTAAACTG 682 85 42 Antisense
GTAAACTGCATCCGACACAAAATCA 377 461 59 Antisense
ATTGCCCCCAGAACCATTGAATAGA 151 7 87 Antisense
CTCAGCCCAGACGCACAACAAAAGC 584 227 146 Antisense
ACAAAAGCTCCTTCAACATCTTCTC 591 111 163 Antisense
CAACAATTCATGATCGGCAGACCCC 56 191 188 Antisense
CAACTACACCTAAATCGCCAACAGA 183 189 221 Antisense
ACTGAAGTCGTGAATCCAGCTGCTT 355 97 283 Antisense
ATCCAGCTGCTTATGCTCAACGTGG 149 39 296 Antisense
ATACAGCACGAGTCTCTTGGGCGAA 154 25 344 Antisense
Sequence Source Affymetrix Proprietary Database