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[176058_at]

Description Y55F3C.A /REP_DB=WormBase Gene ID /WP=CE26189 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 54      4grp_total > 07      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 41.8
(3)
A 		7.6
(-2.2)
A 		2
(-3)
A 		21.7
(-0)
A 		40
B 4.5
(-3)
A 		5.4
(-2.9)
A 		50.8
(3)
A 		17.9
(-1.3)
A 		46
C 9.7
(-2.3)
A 		10.8
(-2.1)
A 		7
(-3)
A 		31.2
(3)
A 		24
avr 18.7
(1.1) 		7.9
(-3) 		19.9
(1.6) 		23.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5.2
(-1.9)
A 		4.4
(-2.2)
A 		2.3
(-3)
A 		17.9
(2.7)
A 		18.8
(3)
A 		7
(-1.3)
A 		17
B 28.9
(3)
A 		1.4
(-3)
A 		7.2
(-1.7)
A 		5.1
(-2.2)
A 		2.1
(-2.8)
A 		24
(1.9)
A 		28
C 9.2
(-2.2)
A 		3.7
(-2.9)
A 		49.6
(3)
A 		11
(-2)
A 		3
(-3)
A 		12.7
(-1.8)
A 		47
avr 14.4
(1.1) 		3.2
(-3) 		19.7
(3) 		11.3
(-0.1) 		8
(-1.3) 		14.6
(1.1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.2
(3)
A 		1.6
(-2.6)
A 		0.5
(-3)
A 		3.2
(-1.9)
A 		15
B 1.4
(-2.9)
A 		1.3
(-3)
A 		11.8
(3)
A 		3.8
(-1.6)
A 		11
C 3.2
(-1.5)
A 		3.1
(-1.7)
A 		2.5
(-3)
A 		5.3
(3)
A 		3
avr 6.6
(3) 		2
(-3) 		4.9
(0.8) 		4.1
(-0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1
(-2.4)
A 		1.6
(-1.7)
A 		0.5
(-3)
A 		4.5
(1.6)
A 		5.7
(3)
A 		1.7
(-1.6)
A 		5
B 10.1
(3)
A 		0.5
(-3)
A 		1.7
(-2.3)
A 		1.4
(-2.4)
A 		0.8
(-2.8)
A 		8.9
(2.3)
A 		10
C 3.4
(-1.8)
A 		1.1
(-2.9)
A 		12.6
(3)
A 		2.2
(-2.4)
A 		1
(-3)
A 		4.3
(-1.3)
A 		12
avr 4.8
(2.7) 		1.1
(-3) 		4.9
(2.8) 		2.7
(-0.5) 		2.5
(-0.8) 		5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19374
Sequence Type Exemplar sequence
Representative Public ID Y55F3C.A NCBI
Target Description Y55F3C.A /REP_DB=WormBase Gene ID /WP=CE26189 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y55F3C.A
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y55F3C.A Y55F3C.A /REP_DB=WormBase Gene ID /WP=CE26189 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067578 9/11 Negative Strand Matching Probes None
SNAP00000015010 9/11 Negative Strand Matching Probes None
GENEFINDER00000015020 9/11 Negative Strand Matching Probes None
Y55F3C.2 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:758889-759079(-) 89.2 89.2
Sequence
Target Sequence 
>C. ELEGANS:176058_AT
gcacatcgtcgtcgtgacaatgtccagaacttccagtccttgttgtcaacctcgcctcaa
caccgactacactaaggatcggacgaagagtcgttgtccgattggagccaattctggcct
tatctctaatgatacgtggcaccaaaagatcgatgacccctcgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACATCGTCGTCGTGACAATGTCC 442 317 15 Antisense
TCGTGACAATGTCCAGAACTTCCAG 316 605 26 Antisense
GCCTCAACACCGACTACACTAAGGA 62 283 68 Antisense
CACCGACTACACTAAGGATCGGACG 406 199 75 Antisense
AGGATCGGACGAAGAGTCGTTGTCC 133 55 89 Antisense
GAGTCGTTGTCCGATTGGAGCCAAT 224 401 102 Antisense
TGGAGCCAATTCTGGCCTTATCTCT 630 547 117 Antisense
CAATTCTGGCCTTATCTCTAATGAT 138 181 123 Antisense
ATCTCTAATGATACGTGGCACCAAA 322 33 136 Antisense
GTGGCACCAAAAGATCGATGACCCC 499 491 150 Antisense
CCAAAAGATCGATGACCCCTCGTCG 201 275 156 Antisense
Sequence Source Affymetrix Proprietary Database