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[176056_at]

Description Y105E8B.Z /REP_DB=WormBase Gene ID /WP=CE24107 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 04      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 50      6grp_total > 15      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 691.8
(3)
P 		548.5
(0)
P 		613.6
(1.4)
P 		404.5
(-3)
P 		287
B 635.7
(2.1)
P 		688.7
(3)
P 		469.4
(-0.9)
P 		348.1
(-3)
P 		341
C 660
(3)
P 		585.5
(1.4)
P 		433.2
(-1.9)
P 		380.3
(-3)
P 		280
avr 662.5
(3) 		607.6
(1.8) 		505.4
(-0.3) 		377.6
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 874.8
(3)
P 		695.1
(1.3)
P 		389.1
(-1.7)
P 		337.7
(-2.2)
P 		406.6
(-1.5)
P 		256.5
(-3)
P 		618
B 781.4
(3)
P 		722.4
(2.3)
P 		521.1
(-0.2)
P 		413.4
(-1.5)
P 		291
(-3)
P 		330.1
(-2.5)
P 		490
C 759.9
(3)
P 		661.5
(1.8)
P 		611.5
(1.2)
P 		420.7
(-1)
P 		331.3
(-2.1)
P 		253.5
(-3)
P 		506
avr 805.4
(3) 		693
(1.7) 		507.2
(-0.4) 		390.6
(-1.7) 		343
(-2.3) 		280
(-3) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 251.9
(3)
P 		119.1
(-1.1)
P 		160.4
(0.2)
P 		59.2
(-3)
P 		193
B 202.7
(3)
P 		170.1
(1.5)
P 		108.8
(-1.4)
P 		74.2
(-3)
P 		129
C 218.5
(3)
P 		168.3
(1)
P 		151
(0.4)
P 		64.1
(-3)
P 		154
avr 224.4
(3) 		152.5
(0.3) 		140.1
(-0.2) 		65.8
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 161.3
(0.2)
P 		247.2
(3)
P 		84.7
(-2.3)
P 		85.7
(-2.2)
P 		122.7
(-1)
P 		62.4
(-3)
P 		185
B 271.9
(3)
P 		240.5
(1.8)
P 		126.5
(-2.4)
P 		109.5
(-3)
P 		118.2
(-2.7)
P 		123.1
(-2.5)
P 		162
C 281.7
(3)
P 		201.9
(0.6)
P 		155.6
(-0.8)
P 		84.6
(-3)
P 		107.2
(-2.3)
P 		84.9
(-3)
P 		197
avr 238.3
(3) 		229.9
(2.7) 		122.3
(-1.7) 		93.3
(-2.9) 		116
(-2) 		90.1
(-3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18808
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.Z NCBI
Target Description Y105E8B.Z /REP_DB=WormBase Gene ID /WP=CE24107 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026515(11), NM_001026514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026515 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-301) (tag-301) mRNA, complete cds. 11/11 None
NM_001026514 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-301) (tag-301) mRNA, complete cds. 11/11 None
GENEFINDER00000013497 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14537650:14554752:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013351 3/11 Cross Hyb Matching Probes None
SNAP00000013355 7/11 Cross Hyb Matching Probes None
Y105E8A.26 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14537580-14554683(+) 94.94 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79187 Hypothetical protein Y105E8A.26b [Caenorhabditis elegans] ref|NP_001021686.1| Temporarily Assigned Gene name family member (tag-301) [Caenorhabditis elegans] 0.0
blast CAD56252 Hypothetical protein Y105E8A.26a [Caenorhabditis elegans] ref|NP_001021685.1| Temporarily Assigned Gene name family member (tag-301) [Caenorhabditis elegans] 0.0
blast CAE72598 Hypothetical protein CBG19788 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.1E-15
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 4.9E-9
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 4.9E-11
Pfam IPR000906 EMBL-EBI ZU5 domain 1.9E-20
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.0E-6
Pfam IPR000906 EMBL-EBI ZU5 domain 1.9E-20
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-12
Pfam IPR000906 EMBL-EBI ZU5 domain 1.9E-20
Pfam IPR008144 EMBL-EBI Guanylate kinase 2.0E-6
Sequence
Target Sequence 
>C. ELEGANS:176056_AT
aaaatcagacacctccagtggttccagcgaggactaatggaagtgcttcaccggcgaatg
cgagtatctcgttgactgtctccaatgttccaacagggtcttcaatagcctcaaaatcac
caactccccgcctagatgagaacgaaaacggtcaaaagtcggaagaagaagagccgacag
tagtggaggagagcaccgcactaattggatccctcggtggagttattcgatgtgaaaagt
caaatgtcgagttacggataccggcgggtgcaattacagaaggacaagaacatgagatat
atgtgaaagtgtgtcgagaaggagattcatcaccgattgatagatcaaaaggagagacac
ttctatcaccgttggtcatgtgtggtccgcaaggtctaaaattcgaaaagcaatgtgaac
tccgtatgccgcacacgggacccgtcaccgccgactcggacggtcaatggtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCAGACACCTCCAGTGGTTCC 318 133 3200 Antisense
GCTTCACCGGCGAATGCGAGTATCT 567 305 3244 Antisense
GTATCTCGTTGACTGTCTCCAATGT 334 455 3263 Antisense
CAATAGCCTCAAAATCACCAACTCC 696 179 3302 Antisense
AACTCCCCGCCTAGATGAGAACGAA 400 139 3321 Antisense
AGAGCACCGCACTAATTGGATCCCT 522 69 3389 Antisense
GGATCCCTCGGTGGAGTTATTCGAT 378 511 3406 Antisense
AGACACTTCTATCACCGTTGGTCAT 518 71 3554 Antisense
GTCATGTGTGGTCCGCAAGGTCTAA 22 467 3574 Antisense
AGCAATGTGAACTCCGTATGCCGCA 21 77 3608 Antisense
GCCGACTCGGACGGTCAATGGTCAT 41 285 3649 Antisense
Sequence Source Affymetrix Proprietary Database