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[176055_at]

Description Y41D4B.S /REP_DB=WormBase Gene ID /WP=CE21831 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 67      4grp_total > 0      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 51.4
(-3)
A 		84.4
(1.8)
A 		92.7
(3)
A 		86.6
(2.1)
A 		41
B 67
(0.2)
A 		36.2
(-3)
A 		51.3
(-1.4)
A 		93.1
(3)
A 		57
C 25.3
(-3)
A 		27.9
(-2.7)
A 		75
(2.4)
A 		80.9
(3)
M 		56
avr 47.9
(-3) 		49.5
(-2.8) 		73
(0.9) 		86.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 49.9
(-2)
A 		26.7
(-2.6)
A 		82.5
(-1.1)
P 		9.2
(-3)
A 		78
(-1.2)
A 		243.4
(3)
P 		234
B 54.9
(-2.2)
A 		74.8
(-1.8)
A 		11.7
(-3)
A 		70.5
(-1.9)
A 		54.9
(-2.2)
A 		335.8
(3)
P 		324
C 106
(-1.6)
P 		76.5
(-2.1)
A 		67.8
(-2.3)
A 		24.8
(-3)
A 		87.2
(-1.9)
P 		374
(3)
P 		349
avr 70.3
(-2.2) 		59.3
(-2.5) 		54
(-2.6) 		34.8
(-3) 		73.4
(-2.2) 		317.7
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.7
(0.1)
A 		18.3
(-0.1)
A 		24.2
(3)
A 		12.7
(-3)
A 		12
B 21.4
(3)
A 		8.9
(-3)
A 		11.9
(-1.6)
A 		19.8
(2.2)
A 		13
C 8.4
(-2.9)
A 		8
(-3)
A 		26.1
(3)
A 		13.6
(-1.1)
M 		18
avr 16.2
(0) 		11.7
(-3) 		20.7
(3) 		15.4
(-0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 9.2
(-2.3)
A 		9.5
(-2.2)
A 		18
(-1.3)
P 		2.3
(-3)
A 		23.5
(-0.8)
A 		59.3
(3)
P 		57
B 19.1
(-2.2)
A 		24.9
(-1.9)
A 		2.8
(-3)
A 		18.7
(-2.2)
A 		22.3
(-2)
A 		125.2
(3)
P 		122
C 39.3
(-1.3)
P 		23.4
(-2.1)
A 		17.3
(-2.4)
A 		5
(-3)
A 		28.2
(-1.8)
P 		125.2
(3)
P 		120
avr 22.5
(-2.1) 		19.3
(-2.3) 		12.7
(-2.7) 		8.7
(-3) 		24.7
(-2) 		103.2
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19349
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.S NCBI
Target Description Y41D4B.S /REP_DB=WormBase Gene ID /WP=CE21831 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067707 NCBI Caenorhabditis elegans Delta/Serrate/Lag-2 domain family member (dsl-3) (dsl-3) mRNA, complete cds. 11/11 None
SNAP00000005514 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1609228:1612876:1 11/11 None
GENEFINDER00000005547 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1611002:1612876:1 11/11 None
Y41D4B.10 ENSEMBL cdna:known chromosome:CEL140:IV:1610417:1612913:1 gene:Y41D4B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1611007-1612882(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dsl-3
Ensembl Y41D4B.10
Entrez Gene 176970 Entrez gene
SwissProt Q95Y10 EMBL-EBI
WormBase CE27622 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7154 cell communication inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68460 Delta/serrate/lag-2 domain protein 3 [Caenorhabditis elegans] ref|NP_500108.1| Delta/Serrate/Lag-2 domain family member (dsl-3) [Caenorhabditis elegans] 1.0E-155
blast AAK68460 Delta/serrate/lag-2 domain protein 3 [Caenorhabditis elegans] ref|NP_500108.1| Delta/Serrate/Lag-2 domain family member (dsl-3) [Caenorhabditis elegans] 1.0E-147
blast AAK68460 Delta/serrate/lag-2 domain protein 3 [Caenorhabditis elegans] ref|NP_500108.1| Delta/Serrate/Lag-2 domain family member (dsl-3) [Caenorhabditis elegans] 1.0E-120
blast CAE67967 Hypothetical protein CBG13573 [Caenorhabditis briggsae] 1.0E-96
blast CAE67967 Hypothetical protein CBG13573 [Caenorhabditis briggsae] 1.0E-94
blast CAE67967 Hypothetical protein CBG13573 [Caenorhabditis briggsae] 5.0E-83
blast CAA97804 Hypothetical protein F58B3.8 [Caenorhabditis elegans] ref|NP_502191.1| Delta/Serrate/Lag-2 domain family member (dsl-5) [Caenorhabditis elegans] 4.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-16
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-16
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-16
Sequence
Target Sequence 
>C. ELEGANS:176055_AT
gatggctccgagtatcagattacgatttttgttattaatcaggatcgactagacattgac
aacgccaccatcaccacatcatttgttccgaaaaatggtcaaatttccccgctgaccgtg
atgttcccgtttacaggcatcagaatgcgtgtaggatgcgatgaacaatggcacggcgag
aaatgtgacgtgttctgctgctccgaaaccgcttcccgagtcggaaaagtgtgcaattcc
catggtcaactcggatgtccccaaggaaaacgaggtctcgactgtgctctaccaatcagt
aagaaatggtgtaaatgccagaacaacggagcatgcatctcctcattcggaaagaatttg
cacgagaaaatgcaatgcgagtgtcagctgggatttcgtggatctcattgtgaagaacgt
gtcgacaacatcgagatgaagtcgacgtacggtgtggatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTCCGAGTATCAGATTACGA 42 407 37 Antisense
GACTAGACATTGACAACGCCACCAT 190 373 83 Antisense
CACCATCACCACATCATTTGTTCCG 127 203 102 Antisense
ATGTTCCCGTTTACAGGCATCAGAA 371 47 157 Antisense
AGAAATGTGACGTGTTCTGCTGCTC 274 73 215 Antisense
AGTGTGCAATTCCCATGGTCAACTC 289 59 264 Antisense
TCAACTCGGATGTCCCCAAGGAAAA 290 629 282 Antisense
TCTCGACTGTGCTCTACCAATCAGT 369 609 312 Antisense
GCATGCATCTCCTCATTCGGAAAGA 264 311 367 Antisense
GAGTGTCAGCTGGGATTTCGTGGAT 399 401 415 Antisense
GAAGTCGACGTACGGTGTGGATCCA 368 327 474 Antisense
Sequence Source Affymetrix Proprietary Database