[Home] | [Total List]

[176054_at] 7TM chemoreceptor, srt family

Description Y55F3C.H /REP_DB=WormBase Gene ID /WP=CE22566 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 36      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 40.6
(-1.4)
A 		103.5
(3)
A 		17
(-3)
A 		58
(-0.2)
A 		87
B 35.5
(-1.3)
A 		83.8
(3)
A 		16.3
(-3)
A 		29.6
(-1.8)
A 		68
C 52.9
(0.2)
A 		12.1
(-2.6)
A 		6.9
(-3)
A 		92.4
(3)
A 		86
avr 43
(0.3) 		66.5
(3) 		13.4
(-3) 		60
(2.3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 91.9
(3)
A 		37.1
(-1)
A 		41.5
(-0.7)
A 		18.1
(-2.4)
A 		10.5
(-3)
A 		34.9
(-1.2)
A 		81
B 49.6
(2.7)
A 		21.3
(-0.9)
A 		51.6
(3)
A 		4.5
(-3)
A 		44
(2)
A 		16.5
(-1.5)
A 		47
C 66.6
(2.6)
A 		27.5
(-1)
A 		7.6
(-2.8)
A 		70.6
(3)
A 		5.6
(-3)
A 		6.4
(-2.9)
A 		65
avr 69.4
(3) 		28.6
(-1.9) 		33.6
(-1.3) 		31.1
(-1.6) 		20
(-2.9) 		19.3
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.8
(0.4)
A 		22.5
(3)
A 		4.4
(-3)
A 		8.5
(-1.6)
A 		18
B 11.3
(-0.3)
A 		20.7
(3)
A 		3.8
(-3)
A 		6.3
(-2.1)
A 		17
C 17.5
(3)
A 		3.5
(-2.6)
A 		2.4
(-3)
A 		15.6
(2.2)
A 		15
avr 14.5
(2.5) 		15.6
(3) 		3.5
(-3) 		10.1
(0.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 16.9
(3)
A 		13.2
(1.4)
A 		9
(-0.5)
A 		4.6
(-2.4)
A 		3.2
(-3)
A 		8.5
(-0.7)
A 		14
B 17.2
(2.7)
A 		7.1
(-0.9)
A 		12.5
(1.1)
A 		1.2
(-3)
A 		17.9
(3)
A 		6.2
(-1.2)
A 		17
C 24.7
(3)
A 		8.4
(-1.3)
A 		1.9
(-3)
A 		14.2
(0.2)
A 		1.8
(-3)
A 		2.1
(-2.9)
A 		23
avr 19.6
(3) 		9.6
(-1.3) 		7.8
(-2.1) 		6.7
(-2.5) 		7.6
(-2.1) 		5.6
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19271
Sequence Type Exemplar sequence
Representative Public ID Y55F3C.H NCBI
Target Description Y55F3C.H /REP_DB=WormBase Gene ID /WP=CE22566 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067578(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067578 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-23) (srt-23) mRNA, complete cds. 9/11 None
SNAP00000015010 ENSEMBL cdna:SNAP chromosome:CEL140:IV:757738:759084:1 9/11 None
GENEFINDER00000015020 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:756721:759120:1 9/11 None
Y55F3C.2 ENSEMBL cdna:known chromosome:CEL140:IV:756721:759084:1 gene:Y55F3C.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:758713-759090(+) 97.67 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-23
Ensembl Y55F3C.2
Entrez Gene 190321 Entrez gene
SwissProt Q5KQP7 EMBL-EBI
WormBase CE38007 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAW57824 Serpentine receptor, class t protein 23 [Caenorhabditis elegans] ref|NP_499979.2| Serpentine Receptor, class T family member (srt-23) [Caenorhabditis elegans] 0.0
blast AAY86308 Hypothetical protein Y55F3C.10 [Caenorhabditis elegans] 0.0
blast AAK72079 Serpentine receptor, class t protein 24 [Caenorhabditis elegans] ref|NP_499976.2| Serpentine Receptor, class T family member (srt-24) [Caenorhabditis elegans] 1.0E-143
blast AAW57824 Serpentine receptor, class t protein 23 [Caenorhabditis elegans] ref|NP_499979.2| Serpentine Receptor, class T family member (srt-23) [Caenorhabditis elegans] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.7E-115
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.6E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499979.2 7 44-66,79-101,116-138,159-181,206-228,249-268,278-300
Y55F3C.2 7 44-66,79-101,116-138,159-181,206-228,249-268,278-300
SNAP00000015010 3 20-42,63-82,92-114
GENEFINDER00000015020 7 44-66,79-101,116-138,159-181,206-228,249-268,278-300
Sequence
Target Sequence 
>C. ELEGANS:176054_AT
gatgatgacaattttgagctcgttgaagtagaaggagaaaccaatagatccgtttgcatc
gtgtacatcacaatgaacaagaccgtccgacgaggggtcatcgatcttttggtgccacgt
atcattagagataaggccagaattggctccaatcggacaacgactcttcgtccgatcctt
agtgtagtcggtgttgaggcgaggttgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATGACAATTTTGAGCTCGTTG 434 411 28 Antisense
AACCAATAGATCCGTTTGCATCGTG 317 147 66 Antisense
CAAGACCGTCCGACGAGGGGTCATC 111 183 105 Antisense
GTCCGACGAGGGGTCATCGATCTTT 360 475 112 Antisense
CATCGATCTTTTGGTGCCACGTATC 141 213 126 Antisense
TTTGGTGCCACGTATCATTAGAGAT 559 665 135 Antisense
AGGCCAGAATTGGCTCCAATCGGAC 529 51 161 Antisense
CGGACAACGACTCTTCGTCCGATCC 573 241 181 Antisense
CTTCGTCCGATCCTTAGTGTAGTCG 132 3 193 Antisense
GATCCTTAGTGTAGTCGGTGTTGAG 288 415 201 Antisense
GTCGGTGTTGAGGCGAGGTTGACAA 23 471 214 Antisense
Sequence Source Affymetrix Proprietary Database