[Home] | [Total List]

[176053_s_at]

Description F09G8.8 /REP_DB=WormBase Gene ID /WP=CE23637 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 81      6grp_total > 54      4grp_total > 61      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 340.8
(3)
P 		246.3
(-0.3)
P 		298
(1.5)
P 		169.8
(-3)
P 		171
B 334
(3)
P 		215.6
(0.2)
P 		313.8
(2.5)
P 		83.5
(-3)
P 		251
C 324.5
(2.5)
P 		232.3
(0.1)
P 		345.9
(3)
P 		112.3
(-3)
P 		234
avr 333.1
(3) 		231.4
(0.1) 		319.2
(2.6) 		121.9
(-3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 160.4
(-3)
P 		306.6
(1.6)
P 		350.4
(3)
P 		301.2
(1.5)
P 		159.5
(-3)
P 		232.1
(-0.7)
P 		191
B 163.7
(-3)
P 		289.5
(0.7)
P 		370.3
(3)
P 		187.7
(-2.3)
P 		200.9
(-1.9)
P 		286.8
(0.6)
P 		207
C 178.5
(-3)
P 		279.8
(0.4)
P 		356.2
(3)
P 		297.7
(1)
P 		227.6
(-1.3)
P 		291.7
(0.8)
P 		178
avr 167.5
(-3) 		292
(0.9) 		359
(3) 		262.2
(-0) 		196
(-2.1) 		270.2
(0.2) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 124.1
(3)
P 		53.5
(-1.3)
P 		77.9
(0.2)
P 		24.9
(-3)
P 		99
B 106.5
(3)
P 		53.3
(-0.6)
P 		72.7
(0.7)
P 		17.8
(-3)
P 		89
C 107.4
(2.2)
P 		66.8
(-0.2)
P 		120.5
(3)
P 		18.9
(-3)
P 		102
avr 112.7
(3) 		57.9
(-0.6) 		90.4
(1.5) 		20.5
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 29.6
(-3)
P 		109
(3)
P 		76.3
(0.5)
P 		76.4
(0.5)
P 		48.1
(-1.6)
P 		56.5
(-1)
P 		79
B 57
(-2.2)
P 		96.4
(1.9)
P 		89.9
(1.2)
P 		49.7
(-3)
P 		81.6
(0.3)
P 		106.9
(3)
P 		57
C 66.2
(-2)
P 		85.4
(1.1)
P 		90.7
(1.9)
P 		59.9
(-3)
P 		73.7
(-0.8)
P 		97.6
(3)
P 		38
avr 50.9
(-3) 		96.9
(3) 		85.6
(1.5) 		62
(-1.6) 		67.8
(-0.8) 		87
(1.7) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176053_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6619
Sequence Type Exemplar sequence
Representative Public ID F09G8.8 NCBI
Target Description F09G8.8 /REP_DB=WormBase Gene ID /WP=CE23637 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066418 NCBI Caenorhabditis elegans F09G8.8 (F09G8.8) mRNA, complete cds. 11/11 None
SNAP00000034506 ENSEMBL cdna:SNAP chromosome:CEL140:III:8272924:8275887:-1 11/11 None
GENEFINDER00000034515 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8272924:8275887:-1 11/11 None
F09G8.8 ENSEMBL cdna:known chromosome:CEL140:III:8272891:8275887:-1 gene:F09G8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8272919-8277451(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G8.8
Entrez Gene 176167 Entrez gene
SwissProt P34393 EMBL-EBI
WormBase CE33579 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498819 F09G8.8 [Caenorhabditis elegans] gb|AAK84522.2| Hypothetical protein F09G8.8 [Caenorhabditis elegans] sp|P34393|YLS8_CAEEL Hypothetical protein F09G8.8 in chromosome III precursor 0.0
blast CAE70174 Hypothetical protein CBG16647 [Caenorhabditis briggsae] 0.0
blast CAB03055 Hypothetical protein F35C5.5a [Caenorhabditis elegans] ref|NP_496741.1| F35C5.5a [Caenorhabditis elegans] 6.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.5E-30
Sequence
Target Sequence 
>C. ELEGANS:176053_S_AT
gaaatcgcaagcccaagaatgaacttcacatcttttcgagatgacttgttggttgaacaa
atggaggatgctttgtgtcaggtcaactgctattgcccaaatggatggaaacagttggta
ttggaaaaccgaaagtacggagaatgtttcttcccaacgaagattgatgccagttggaca
gcatctaaattcgaatgtccggtactttcaaaagaacacactggaaatggacatttagtt
tatgtaaattccgagctcaaaaacacattcctcaatcaattctacatggataactggtac
cctgaaaatcaagaaaatccaaactatgacattggatattactatgatcaagctacgaaa
aagtttatttgggtgaatggagtgacaaataatccatattcaaattgggctactggacat
ccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCGCAAGCCCAAGAATGAACT 107 363 1483 Antisense
GAATGAACTTCACATCTTTTCGAGA 614 331 1499 Antisense
AATGGAGGATGCTTTGTGTCAGGTC 300 163 1542 Antisense
GTGTCAGGTCAACTGCTATTGCCCA 582 485 1557 Antisense
GAGAATGTTTCTTCCCAACGAAGAT 411 391 1622 Antisense
GCCAGTTGGACAGCATCTAAATTCG 527 275 1651 Antisense
TAAATTCGAATGTCCGGTACTTTCA 383 641 1668 Antisense
AGCTCAAAAACACATTCCTCAATCA 382 77 1736 Antisense
ACATTCCTCAATCAATTCTACATGG 185 105 1747 Antisense
TCTACATGGATAACTGGTACCCTGA 507 613 1763 Antisense
CAAATTGGGCTACTGGACATCCAGA 614 191 1883 Antisense
Sequence Source Affymetrix Proprietary Database