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[176052_at]

Description C50C3.1 /REP_DB=WormBase Gene ID /WP=CE00115 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 5.4
(-3)
A 		66.6
(0.2)
A 		27.8
(-1.8)
A 		121.1
(3)
A 		116
B 7
(-3)
A 		12.4
(-2.4)
A 		47.6
(1.7)
A 		58.8
(3)
A 		52
C 8.6
(-3)
A 		56.7
(0.1)
A 		69.8
(1)
A 		101.5
(3)
A 		93
avr 7
(-3) 		45.2
(-0.4) 		48.4
(-0.1) 		93.8
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 4.7
(-3)
A 		7.8
(-2.9)
A 		7.6
(-2.9)
A 		122.6
(-0.7)
A 		188.7
(0.5)
P 		316.7
(3)
P 		312
B 4.8
(-3)
A 		28.9
(-2.5)
A 		50.1
(-2.1)
A 		65.3
(-1.8)
A 		157.1
(0.1)
P 		298
(3)
P 		293
C 18.2
(-2.8)
A 		9.5
(-3)
A 		38.6
(-2.5)
A 		33.1
(-2.6)
A 		171.4
(-0)
P 		338.6
(3)
P 		329
avr 9.2
(-3) 		15.4
(-2.9) 		32.1
(-2.6) 		73.7
(-1.7) 		172.4
(0.2) 		317.8
(3) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 2
(-3)
A 		14.5
(1.8)
A 		7.3
(-1)
A 		17.7
(3)
A 		16
B 2.2
(-3)
A 		3.1
(-2.5)
A 		11
(2.1)
A 		12.5
(3)
A 		10
C 2.8
(-3)
A 		16.3
(0.8)
A 		24.3
(3)
A 		17.1
(1)
A 		22
avr 2.3
(-3) 		11.3
(1) 		14.2
(2.3) 		15.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2.8
(-2.9)
A 		1.7
(-2.9)
A 		31.1
(-0.6)
A 		56.9
(1.4)
P 		77.1
(3)
P 		76
B 1.7
(-3)
A 		9.6
(-2.6)
A 		12.2
(-2.4)
A 		17.3
(-2.1)
A 		63.8
(0.4)
P 		111.1
(3)
P 		109
C 6.7
(-2.8)
A 		2.9
(-3)
A 		9.8
(-2.6)
A 		6.7
(-2.8)
A 		55.5
(-0.1)
P 		113.3
(3)
P 		110
avr 3.1
(-3) 		5.1
(-2.9) 		7.9
(-2.7) 		18.4
(-2.1) 		58.7
(0.4) 		100.5
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7589
Sequence Type Exemplar sequence
Representative Public ID C50C3.1 NCBI
Target Description C50C3.1 /REP_DB=WormBase Gene ID /WP=CE00115 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066387 NCBI Caenorhabditis elegans C50C3.1 (C50C3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000020242 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8181854:8193530:1 11/11 None
SNAP00000020236 ENSEMBL cdna:SNAP chromosome:CEL140:III:8191916:8193530:1 11/11 None
C50C3.1 ENSEMBL cdna:known chromosome:CEL140:III:8190725:8193582:1 gene:C50C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8190720-8193578(+) 98.44 100.0
Public Domain and Genome References
Gene Title
Ensembl C50C3.1
Entrez Gene 183641 Entrez gene
SwissProt P34366 EMBL-EBI
WormBase CE00115 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27972 Hypothetical protein C50C3.1 [Caenorhabditis elegans] ref|NP_498788.1| C50C3.1 [Caenorhabditis elegans] sp|P34366|YLJ1_CAEEL Hypothetical protein C50C3.1 in chromosome III 0.0
blast AAA27974 Hypothetical protein C50C3.2 [Caenorhabditis elegans] ref|NP_498787.1| C50C3.2 [Caenorhabditis elegans] sp|P34367|YLJ2_CAEEL Hypothetical protein C50C3.2 in chromosome III 0.0
blast CAE70194 Hypothetical protein CBG16668 [Caenorhabditis briggsae] 0.0
blast S44621 C50C3.2 protein - Caenorhabditis elegans 0.0
blast AAA27972 Hypothetical protein C50C3.1 [Caenorhabditis elegans] ref|NP_498788.1| C50C3.1 [Caenorhabditis elegans] sp|P34366|YLJ1_CAEEL Hypothetical protein C50C3.1 in chromosome III 1.0E-140
blast CAE70193 Hypothetical protein CBG16667 [Caenorhabditis briggsae] 3.0E-50
blast CAI79130 Hypothetical protein C07A9.13 [Caenorhabditis elegans] ref|NP_001021156.1| C07A9.13 [Caenorhabditis elegans] 3.0E-49
blast CAE70193 Hypothetical protein CBG16667 [Caenorhabditis briggsae] 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0072
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.9E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 1.4E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.29
Pfam IPR002017 EMBL-EBI Spectrin repeat 8.5E-4
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.13
Pfam IPR002017 EMBL-EBI Spectrin repeat 0.49
Pfam IPR002017 EMBL-EBI Spectrin repeat 6.4E-7
Sequence
Target Sequence 
>C. ELEGANS:176052_AT
ctgttccgatcatcacttctggatcatcgccggacattcctcaatgcgtctcgcctgttc
agaatacatatcagcagatctttgaaaataacaccgatacttcggatgaagttcaagact
tttcaattccaccgccgccttatccatcctcattcccggctcctacgacacctctgttag
ccttgatgagccaattgaaacaacgtggaataatctctggagaacagaataatcaacctt
tggataatgttaatccaatgccgcaacaattcgatcgtcgcccatctcgttggacccaag
gcagttggaaagtcgacagaatctgtacatactacataaatcgcccggataaatgtactc
gaggagataattgccgatttaagcacgatgatgtcgaggtttttaaactagagaacaccg
tcaaaaagaaattcaatcctcaagaaatcaaagctggcatcatcgtacttcttcacacaa
atattcatctgaaaattccgatcatcgcggttatcgacgacatcgttccagaagcccaca
tgccagacaataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTTCCGATCATCACTTCTGGATC 560 239 818 Antisense
CAATGCGTCTCGCCTGTTCAGAATA 552 181 859 Antisense
GTTCAAGACTTTTCAATTCCACCGC 248 445 928 Antisense
GACACCTCTGTTAGCCTTGATGAGC 1 369 984 Antisense
CAATGCCGCAACAATTCGATCGTCG 412 181 1073 Antisense
CCATCTCGTTGGACCCAAGGCAGTT 23 269 1099 Antisense
GTACATACTACATAAATCGCCCGGA 85 457 1142 Antisense
AAAGCTGGCATCATCGTACTTCTTC 77 125 1267 Antisense
GATCATCGCGGTTATCGACGACATC 191 419 1317 Antisense
ATCGACGACATCGTTCCAGAAGCCC 71 37 1330 Antisense
CAGAAGCCCACATGCCAGACAATAA 333 205 1346 Antisense
Sequence Source Affymetrix Proprietary Database