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[176048_at]

Description Y41D4B.N /REP_DB=WormBase Gene ID /WP=CE26093 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 73      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 20.9
(-3)
A 		48.1
(-1.5)
M 		65
(-0.5)
P 		127.9
(3)
P 		107
B 26.8
(-3)
A 		44.3
(-1.2)
A 		85.4
(3)
P 		78.6
(2.3)
P 		59
C 16.9
(-3)
A 		74.3
(-1.4)
P 		38.3
(-2.4)
M 		234.7
(3)
P 		218
avr 21.5
(-3) 		55.6
(-1.4) 		62.9
(-1) 		147.1
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 4.4
(-3)
A 		44.9
(0.1)
P 		77.4
(2.6)
P 		82.7
(3)
P 		75.3
(2.4)
P 		59.5
(1.2)
P 		78
B 15.2
(-3)
A 		89.5
(2.7)
P 		63.9
(0.8)
M 		93
(3)
P 		48.6
(-0.4)
P 		52.8
(-0.1)
P 		78
C 33.3
(-1.9)
A 		25.8
(-3)
P 		64.1
(2.6)
A 		66.5
(3)
P 		61.8
(2.3)
P 		57.1
(1.6)
P 		41
avr 17.6
(-3) 		53.4
(0.4) 		68.5
(1.8) 		80.7
(3) 		61.9
(1.2) 		56.5
(0.7) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 7.6
(-3)
A 		10.4
(-1.5)
M 		17
(2.1)
P 		18.7
(3)
P 		11
B 8.6
(-3)
A 		11
(-1.7)
A 		19.8
(3)
P 		16.8
(1.4)
P 		11
C 5.6
(-3)
A 		21.4
(-0.2)
P 		13.4
(-1.6)
M 		39.6
(3)
P 		34
avr 7.3
(-3) 		14.3
(-0.6) 		16.7
(0.2) 		25
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 0.8
(-3)
A 		16
(1.2)
P 		16.9
(1.4)
P 		21
(2.5)
P 		22.7
(3)
P 		14.5
(0.8)
P 		22
B 5.3
(-3)
A 		29.8
(3)
P 		15.5
(-0.5)
M 		24.6
(1.7)
P 		19.7
(0.5)
P 		19.7
(0.5)
P 		25
C 12.3
(-0.8)
A 		7.9
(-3)
P 		16.3
(1.2)
A 		13.4
(-0.3)
P 		20
(3)
P 		19.1
(2.6)
P 		12
avr 6.1
(-3) 		17.9
(1.8) 		16.2
(1.1) 		19.7
(2.6) 		20.8
(3) 		17.8
(1.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19385
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.N NCBI
Target Description Y41D4B.N /REP_DB=WormBase Gene ID /WP=CE26093 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067702
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067702 NCBI Caenorhabditis elegans Y41D4B.14 (Y41D4B.14) mRNA, complete cds. None
Y41D4B.14 ENSEMBL cdna:known chromosome:CEL140:IV:1577153:1578891:1 gene:Y41D4B.14 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005511 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1577203-1578774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.14
Entrez Gene 176967 Entrez gene
SwissProt Q95Y14 EMBL-EBI
WormBase CE29109 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68464 Hypothetical protein Y41D4B.14 [Caenorhabditis elegans] ref|NP_500103.1| Y41D4B.14 [Caenorhabditis elegans] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:176048_AT
gaaaatgtactccgtcagctgatttttgtgtcgattgagaataagatggaggaggagaag
tcgggtgttccggctgtgaattatgcgaagaaagagcccggaatgacgaaagatcagcac
attattcgtgtgagggatagtgttgaggcaatgcttcattcaattgaggaacgcttaact
gctaaaatctccaattttggtcactgttctgtgtgtctaattatcatcatttactgcata
atttggcagaaaattatgagctcacaatcagtcagaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATGTACTCCGTCAGCTGATTT 700 353 109 Antisense
TCCGTCAGCTGATTTTTGTGTCGAT 418 595 119 Antisense
GGAGGAGAAGTCGGGTGTTCCGGCT 440 511 159 Antisense
GGGTGTTCCGGCTGTGAATTATGCG 434 497 171 Antisense
GAGCCCGGAATGACGAAAGATCAGC 5 387 202 Antisense
GATCAGCACATTATTCGTGTGAGGG 513 421 220 Antisense
GTGTTGAGGCAATGCTTCATTCAAT 325 485 248 Antisense
GAACGCTTAACTGCTAAAATCTCCA 678 345 277 Antisense
TTTGGTCACTGTTCTGTGTGTCTAA 195 667 304 Antisense
GTGTCTAATTATCATCATTTACTGC 375 487 321 Antisense
TATGAGCTCACAATCAGTCAGAATC 539 653 363 Antisense
Sequence Source Affymetrix Proprietary Database