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[176047_at]

Description Y105E8B.Q /REP_DB=WormBase Gene ID /WP=CE25169 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_high1_10_10 > 81      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 608
1 2 3 4 range
A 92.7
(-3)
A 		471.1
(2)
P 		547
(3)
P 		99.9
(-2.9)
A 		454
B 59.6
(-3)
A 		662.8
(3)
P 		599.7
(2.4)
P 		126
(-2.3)
A 		603
C 54.8
(-3)
A 		588.5
(3)
P 		463.5
(1.6)
P 		113.6
(-2.3)
A 		534
avr 69
(-3) 		574.1
(3) 		536.7
(2.6) 		113.2
(-2.5) 		505

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 188.8
(-2.4)
M 		362.5
(-0.2)
P 		221.2
(-2)
P 		623.1
(3)
P 		467.5
(1.1)
P 		139.9
(-3)
P 		483
B 306.3
(-0.2)
P 		249.3
(-0.9)
P 		387.3
(0.8)
P 		560.2
(3)
P 		450.6
(1.6)
P 		84.3
(-3)
P 		476
C 295
(0.8)
P 		207.5
(-0.8)
P 		414
(3)
P 		288.1
(0.7)
P 		393.3
(2.6)
P 		88.6
(-3)
P 		325
avr 263.4
(-0.5) 		273.1
(-0.4) 		340.8
(0.7) 		490.5
(3) 		437.1
(2.2) 		104.3
(-3) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 33.8
(-2.1)
A 		102.3
(1.1)
P 		143
(3)
P 		14.6
(-3)
A 		128
B 19
(-3)
A 		163.7
(3)
P 		139
(2)
P 		26.8
(-2.7)
A 		145
C 18.1
(-3)
A 		169.2
(3)
P 		161.5
(2.7)
P 		19.2
(-3)
A 		151
avr 23.6
(-2.8) 		145.1
(2.9) 		147.8
(3) 		20.2
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 34.8
(-3)
M 		128.9
(1.6)
P 		48.2
(-2.3)
P 		158
(3)
P 		141.1
(2.2)
P 		34.1
(-3)
P 		124
B 106.6
(-0)
P 		83
(-1)
P 		94
(-0.5)
P 		148.4
(1.6)
P 		183.1
(3)
P 		31.4
(-3)
P 		152
C 109.3
(1.9)
P 		63.3
(-0.9)
P 		105.4
(1.7)
P 		57.9
(-1.3)
P 		127.3
(3)
P 		29.7
(-3)
P 		98
avr 83.6
(-0.4) 		91.7
(0) 		82.5
(-0.4) 		121.4
(1.5) 		150.5
(3) 		31.7
(-3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18806
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.Q NCBI
Target Description Y105E8B.Q /REP_DB=WormBase Gene ID /WP=CE25169 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170945(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170945 NCBI Caenorhabditis elegans Y105E8A.13 (Y105E8A.13) mRNA, complete cds. 11/11 None
GENEFINDER00000013506 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14468621:14473257:-1 11/11 None
SNAP00000013338 ENSEMBL cdna:SNAP chromosome:CEL140:I:14469343:14473257:-1 9/11 None
Y105E8A.13 ENSEMBL cdna:known chromosome:CEL140:I:14468621:14473257:-1 gene:Y105E8A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14468551-14473188(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.13
Entrez Gene 260217 Entrez gene
SwissProt Q9NEY3 EMBL-EBI
WormBase CE25169 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC48133 Hypothetical protein Y105E8A.13 [Caenorhabditis elegans] ref|NP_740941.1| Y105E8A.13 [Caenorhabditis elegans] 0.0
blast CAE64136 Hypothetical protein CBG08752 [Caenorhabditis briggsae] 1.0E-110
blast CAC48133 Hypothetical protein Y105E8A.13 [Caenorhabditis elegans] ref|NP_740941.1| Y105E8A.13 [Caenorhabditis elegans] 3.0E-96
blast CAE64136 Hypothetical protein CBG08752 [Caenorhabditis briggsae] 2.0E-69
blast CAB04571 Hypothetical protein K05C4.8 [Caenorhabditis elegans] ref|NP_493563.1| K05C4.8 [Caenorhabditis elegans] 2.0E-21
blast CAB04571 Hypothetical protein K05C4.8 [Caenorhabditis elegans] ref|NP_493563.1| K05C4.8 [Caenorhabditis elegans] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:176047_AT
atttcgagttcccagctaagcatttattatgcttatcacacaatttgtcgggtgcaagaa
cgtatgccacctacctctgggcagcagccactcaactgtggaagccctatgagcttgacc
gtctcgatgtcctctgcagttggtcctacttgtgcattcaattcgccgatgttgccagtg
aagaagttctcgctgtaattgagagctccaaggacttatccaaagaagttctatcaaatg
tgattgttattgaaaacggccaccaagctaaccaacgtctcctgacagtcgaacggaacc
ttcgagatgccagagcactggctgagaagctcggaaaacgaatcgtaaagccaactgcgg
cagaagacacccaaactgcaactgcttccccggcagacgagtacctatccccacctattg
caaagaaatggtgcaaatcgccagggaaacgacggaaattaattcaaactgttgtgtatc
gagcgagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGAGTTCCCAGCTAAGCATTT 382 17 362 Antisense
TGCAAGAACGTATGCCACCTACCTC 321 575 414 Antisense
CTATGAGCTTGACCGTCTCGATGTC 253 225 468 Antisense
GAGAGCTCCAAGGACTTATCCAAAG 134 395 562 Antisense
TGAAAACGGCCACCAAGCTAACCAA 531 571 612 Antisense
CCAACGTCTCCTGACAGTCGAACGG 602 273 633 Antisense
GAACCTTCGAGATGCCAGAGCACTG 22 347 657 Antisense
AACTGCGGCAGAAGACACCCAAACT 596 141 714 Antisense
CTATCCCCACCTATTGCAAAGAAAT 37 225 766 Antisense
GGTGCAAATCGCCAGGGAAACGACG 602 497 791 Antisense
CAAACTGTTGTGTATCGAGCGAGAG 583 189 826 Antisense
Sequence Source Affymetrix Proprietary Database