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[176045_at]

Description Y41D4B.O /REP_DB=WormBase Gene ID /WP=CE21834 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 72      4grp_total > 18      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.7
(-2.9)
A 		26.1
(-0.8)
A 		3.4
(-3)
A 		65
(3)
A 		62
B 8.8
(-2.3)
A 		35
(3)
A 		5.5
(-3)
A 		14.2
(-1.2)
A 		30
C 5.7
(-3)
A 		6.4
(-2.9)
A 		26
(0.9)
A 		37.1
(3)
A 		31
avr 6.4
(-3) 		22.5
(-0) 		11.6
(-2) 		38.8
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 11.6
(-1.2)
A 		19.8
(0.9)
A 		28.4
(3)
A 		23.5
(1.8)
A 		26.1
(2.4)
A 		4.3
(-3)
A 		24
B 3.7
(-3)
A 		28
(-0.4)
A 		43.8
(1.3)
A 		59.5
(3)
A 		20.1
(-1.2)
A 		23.7
(-0.8)
A 		56
C 26.5
(-0.5)
A 		60.5
(3)
A 		23.2
(-0.9)
A 		8.9
(-2.3)
A 		47.2
(1.6)
A 		2.4
(-3)
A 		58
avr 13.9
(-2.1) 		36.1
(3) 		31.8
(2) 		30.6
(1.7) 		31.1
(1.8) 		10.1
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.7
(-2.4)
A 		5.7
(0.3)
A 		0.9
(-3)
A 		9.5
(3)
A 		9
B 2.8
(-1.8)
A 		8.6
(3)
A 		1.3
(-3)
A 		3
(-1.6)
A 		7
C 1.9
(-3)
A 		1.9
(-3)
A 		9.1
(3)
A 		6.2
(0.6)
A 		7
avr 2.1
(-3) 		5.4
(1.8) 		3.8
(-0.5) 		6.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.1
(-2)
A 		7
(2.2)
A 		6.2
(1.5)
A 		6
(1.3)
A 		7.9
(3)
A 		1
(-3)
A 		7
B 1.3
(-3)
A 		9.3
(0.3)
A 		10.6
(0.8)
A 		15.8
(3)
A 		8.2
(-0.1)
A 		8.8
(0.1)
A 		15
C 9.8
(0.1)
A 		18.5
(3)
A 		5.9
(-1.3)
A 		1.8
(-2.7)
A 		15.3
(1.9)
A 		0.8
(-3)
A 		18
avr 4.4
(-2.3) 		11.6
(3) 		7.6
(0) 		7.9
(0.3) 		10.5
(2.2) 		3.5
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19372
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.O NCBI
Target Description Y41D4B.O /REP_DB=WormBase Gene ID /WP=CE21834 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071841
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010109 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4572947:4573738:-1 None
Y61A9LA.9 ENSEMBL cdna:known chromosome:CEL140:V:4572947:4573738:-1 gene:Y61A9LA.9 A 
GENEFINDER00000005534 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1586682:1586855:1 None
NM_071841 NCBI Caenorhabditis elegans Y61A9LA.9 (Y61A9LA.9) mRNA, complete cds. A 
SNAP00000005511 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1577198:1586855:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025253 3/11 Cross Hyb Matching Probes None
SNAP00000025245 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1584945-1586861(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y61A9LA.9
Entrez Gene 190447 Entrez gene
SwissProt Q9N312 EMBL-EBI
WormBase CE22673 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60836 Hypothetical protein Y61A9LA.9 [Caenorhabditis elegans] ref|NP_504242.1| Y61A9LA.9 [Caenorhabditis elegans] 1.0E-115
blast AAF60836 Hypothetical protein Y61A9LA.9 [Caenorhabditis elegans] ref|NP_504242.1| Y61A9LA.9 [Caenorhabditis elegans] 3.0E-95
blast AAK68464 Hypothetical protein Y41D4B.14 [Caenorhabditis elegans] ref|NP_500103.1| Y41D4B.14 [Caenorhabditis elegans] 1.0E-33
blast AAG23472 Hypothetical protein Y73B6BL.16 [Caenorhabditis elegans] ref|NP_500972.1| Y73B6BL.16 [Caenorhabditis elegans] 2.0E-27
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 1.0E-17
blast AAG23472 Hypothetical protein Y73B6BL.16 [Caenorhabditis elegans] ref|NP_500972.1| Y73B6BL.16 [Caenorhabditis elegans] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:176045_AT
tcagccaaaaatctcgcgaacttcaaatttttcactcaaaaatccgcaattttacctaaa
atacgagtgtggatgtactcgatcaaccaagtgtcgtggcggtggacaaagacgtgaagc
agcagccagcatttccctgtttgagaagaagactcatttcgccgtgattgaaaatctacc
ggatgatggctcggattcacaatccgccaaggataaggtttttctcgataatttaattgc
cgctaatccctccctccctgtacatattcaaactttccgcgtcaaaactcgcaaaccagt
cttatcccgcccaacaaaaattcgtttctcttctgaagccgaccgcaattcgttcatttt
ctctttctccaaaactctccgttcgttgcctgatcgccccactaaccttccaagacccat
ccgctgcagacgcgatatgaccaacgatgagttatctatcctgagagagttgagagctga
cgcttataacagaaatacccaagctggcgagattcgttattatgtgcgcgaccttaagat
tgtgactctctcgtcaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCAAAAATCTCGCGAACTTCA 568 599 117 Antisense
GCGAACTTCAAATTTTTCACTCAAA 398 289 132 Antisense
CACTCAAAAATCCGCAATTTTACCT 673 197 149 Antisense
AGTGTGGATGTACTCGATCAACCAA 257 59 182 Antisense
GATCAACCAAGTGTCGTGGCGGTGG 673 415 197 Antisense
GTGGCGGTGGACAAAGACGTGAAGC 103 491 212 Antisense
GAGTTGAGAGCTGACGCTTATAACA 193 397 583 Antisense
AATACCCAAGCTGGCGAGATTCGTT 191 171 610 Antisense
GAGATTCGTTATTATGTGCGCGACC 397 397 625 Antisense
GTGCGCGACCTTAAGATTGTGACTC 475 479 640 Antisense
TAAGATTGTGACTCTCTCGTCACCG 318 635 651 Antisense
Sequence Source Affymetrix Proprietary Database