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[176044_at]

Description Y41D4B.L /REP_DB=WormBase Gene ID /WP=CE21859 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 10      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 42      6grp_total > 50      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1711
1 2 3 4 range
A 689.9
(-1.5)
P 		1254.3
(0.5)
P 		1965.5
(3)
P 		254.1
(-3)
P 		1711
B 796.3
(-1.1)
P 		1131.7
(0.2)
P 		1902.8
(3)
P 		271.6
(-3)
P 		1631
C 668
(-1.1)
P 		1133
(1.1)
P 		1544.8
(3)
P 		274.7
(-3)
P 		1270
avr 718.1
(-1.2) 		1173
(0.5) 		1804.4
(3) 		266.8
(-3) 		1538

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 965.7
(3)
P 		805.3
(1.3)
P 		760.4
(0.8)
P 		951.6
(2.9)
P 		634.8
(-0.5)
P 		393.7
(-3)
P 		572
B 897.7
(1.5)
P 		785.4
(0.2)
P 		760.1
(-0)
P 		1030.8
(3)
P 		636
(-1.4)
P 		496.6
(-3)
P 		534
C 803.1
(1.9)
P 		710.7
(0.8)
P 		898.3
(3)
P 		870.7
(2.7)
P 		572.7
(-0.9)
P 		395.8
(-3)
P 		503
avr 888.8
(2.3) 		767.1
(0.9) 		806.3
(1.3) 		951
(3) 		614.5
(-0.9) 		428.7
(-3) 		522
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 501
1 2 3 4 range
A 251.2
(-0.3)
P 		272.3
(-0)
P 		513.8
(3)
P 		37.2
(-3)
P 		477
B 253.9
(0.1)
P 		279.5
(0.5)
P 		440.9
(3)
P 		57.9
(-3)
P 		383
C 221.1
(-0.9)
P 		325.8
(0.4)
P 		538.4
(3)
P 		46.3
(-3)
P 		492
avr 242.1
(-0.4) 		292.5
(0.3) 		497.7
(3) 		47.1
(-3) 		451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 178
(-0.4)
P 		286.4
(3)
P 		165.6
(-0.8)
P 		241.4
(1.6)
P 		191.5
(0)
P 		95.9
(-3)
P 		191
B 312.4
(3)
P 		261.4
(0.6)
P 		184.6
(-3)
P 		273
(1.2)
P 		258.4
(0.5)
P 		185.2
(-3)
P 		128
C 297.7
(3)
P 		216.9
(0.1)
P 		228.6
(0.5)
P 		175.1
(-1.5)
P 		185.3
(-1.1)
P 		132.5
(-3)
P 		165
avr 262.7
(3) 		254.9
(2.6) 		192.9
(-0.4) 		229.8
(1.4) 		211.7
(0.5) 		137.9
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19344
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.L NCBI
Target Description Y41D4B.L /REP_DB=WormBase Gene ID /WP=CE21859 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067699 NCBI Caenorhabditis elegans Y41D4B.16 (Y41D4B.16) mRNA, complete cds. 11/11 None
SNAP00000005508 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1562300:1565131:1 11/11 None
GENEFINDER00000005530 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1562231:1568800:1 11/11 None
Y41D4B.16 ENSEMBL cdna:known chromosome:CEL140:IV:1562182:1564061:1 gene:Y41D4B.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1562236-1564008(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.16
Entrez Gene 176965 Entrez gene
SwissProt Q95Y17 EMBL-EBI
WormBase CE21859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68466 Hypothetical protein Y41D4B.16 [Caenorhabditis elegans] ref|NP_500100.1| Y41D4B.16 [Caenorhabditis elegans] 0.0
blast CAE67962 Hypothetical protein CBG13566 [Caenorhabditis briggsae] 4.0E-97
blast CAE67962 Hypothetical protein CBG13566 [Caenorhabditis briggsae] 7.0E-94
blast CAE67962 Hypothetical protein CBG13566 [Caenorhabditis briggsae] 7.0E-92
blast AAK68465 Hypothetical protein Y41D4B.15 [Caenorhabditis elegans] ref|NP_500101.2| Y41D4B.15 [Caenorhabditis elegans] 2.0E-65
blast AAK68467 Hypothetical protein Y41D4B.17 [Caenorhabditis elegans] ref|NP_500099.1| Y41D4B.17 [Caenorhabditis elegans] 1.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 2.9E-32
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 4.8E-30
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.4E-11
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 5.3E-31
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.8E-21
Sequence
Target Sequence 
>C. ELEGANS:176044_AT
ttaccggcatgtccaacagtcaactgttcagcaacacaagttctgttaacttcttgtcgg
cagggacaaatcggttagggtacagcggatatatcctgaacaccgacatgtttgcgacag
taaatctgacggttcaactctctggacaatctggagccactgattcatacacaacatcag
gctctcaagtgaacgacgattttcatgaggtggagtggcctgctcagagcatgcagctga
ttccgagttctattgagatgggactctactacgttcagtacttcaatatggacaccggtg
caccgactactacttcggcagcactttcctcaactgcttctactccatcaattgcttcta
cagctacttcagccgcaacgaatcctccaacaacaacagcaggggcctcgacaaactctc
cagcaacaaatccgccaaccacctcgcggccaataactgccagtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCGGCATGTCCAACAGTCAACT 300 681 803 Antisense
GGATATATCCTGAACACCGACATGT 157 511 889 Antisense
AAATCTGACGGTTCAACTCTCTGGA 122 119 924 Antisense
TCATACACAACATCAGGCTCTCAAG 89 621 967 Antisense
GTGGCCTGCTCAGAGCATGCAGCTG 513 489 1017 Antisense
CATGCAGCTGATTCCGAGTTCTATT 339 211 1032 Antisense
GAGATGGGACTCTACTACGTTCAGT 454 395 1057 Antisense
TGCACCGACTACTACTTCGGCAGCA 612 573 1101 Antisense
CTACTCCATCAATTGCTTCTACAGC 53 227 1142 Antisense
ACAAACTCTCCAGCAACAAATCCGC 194 111 1213 Antisense
CTCGCGGCCAATAACTGCCAGTCAA 393 233 1245 Antisense
Sequence Source Affymetrix Proprietary Database