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[176043_at]

Description ZK652.9 /REP_DB=WormBase Gene ID /WP=CE07635 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 82      6grp_total > 96      4grp_total > 62      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 318.6
(3)
P 		225
(-0.2)
P 		289.1
(2)
P 		145.2
(-3)
P 		173
B 280.9
(3)
P 		206.1
(-0.8)
P 		260.8
(2)
P 		164
(-3)
P 		117
C 306.8
(2.6)
P 		253.7
(0.7)
P 		316.7
(3)
P 		149.6
(-3)
P 		167
avr 302.1
(3) 		228.3
(0) 		288.9
(2.5) 		152.9
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 260.6
(-2)
P 		305.4
(-0.3)
P 		234.1
(-3)
P 		394.1
(3)
P 		311.9
(-0.1)
P 		346.1
(1.2)
P 		160
B 304.5
(-1.7)
P 		282.5
(-3)
P 		346.1
(0.7)
P 		336.8
(0.2)
P 		385.5
(3)
P 		339.9
(0.3)
P 		103
C 278.3
(-0.4)
P 		288.8
(-0)
P 		338.8
(1.6)
P 		194.7
(-3)
P 		319.8
(1)
P 		384.4
(3)
P 		190
avr 281.1
(-3) 		292.2
(-2.1) 		306.3
(-1) 		308.5
(-0.8) 		339.1
(1.6) 		356.8
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 116
(3)
P 		48.8
(-1.3)
P 		75.6
(0.4)
P 		21.3
(-3)
P 		95
B 89.6
(3)
P 		50.9
(-1.2)
P 		60.4
(-0.2)
P 		34.9
(-3)
P 		55
C 101.6
(2.4)
P 		72.9
(0.4)
P 		110.4
(3)
P 		25.2
(-3)
P 		85
avr 102.4
(3) 		57.5
(-0.6) 		82.1
(1.4) 		27.1
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 48
(-3)
P 		108.6
(3)
P 		51
(-2.7)
P 		99.9
(2.1)
P 		94.1
(1.6)
P 		84.3
(0.6)
P 		61
B 106
(-1.2)
P 		94
(-2.2)
P 		84
(-3)
P 		89.2
(-2.6)
P 		156.6
(3)
P 		126.7
(0.5)
P 		73
C 103.1
(1.3)
P 		88.1
(0.3)
P 		86.2
(0.2)
P 		39.2
(-3)
P 		103.5
(1.3)
P 		128.7
(3)
P 		90
avr 85.7
(-1.4) 		96.9
(0.1) 		73.7
(-3) 		76.1
(-2.7) 		118.1
(3) 		113.2
(2.3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7770
Sequence Type Exemplar sequence
Representative Public ID ZK652.9 NCBI
Target Description ZK652.9 /REP_DB=WormBase Gene ID /WP=CE07635 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066302 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-307) (tag-307) mRNA, complete cds. 11/11 None
SNAP00000029627 ENSEMBL cdna:SNAP chromosome:CEL140:III:7855761:7857139:-1 10/11 None
GENEFINDER00000029638 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7855761:7857139:-1 11/11 None
ZK652.10 ENSEMBL cdna:known chromosome:CEL140:III:7855761:7857163:-1 gene:ZK652.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7855758-7858375(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-307
Ensembl ZK652.10
Entrez Gene 176098 Entrez gene
SwissProt Q95PW5 EMBL-EBI
WormBase CE37465 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19472.1.S1_S_AT similar to Polymerase delta interacting protein 2 (38 kDa DNA polymerase delta interaction protein) (p38) cfa
CANINE_2:CFAAFFX.28517.1.S1_AT similar to Polymerase delta interacting protein 2 (38 kDa DNA polymerase delta interaction protein) (p38) cfa
CANINE_2:CFAAFFX.28517.1.S1_S_AT similar to Polymerase delta interacting protein 2 (38 kDa DNA polymerase delta interaction protein) (p38) cfa
DROSOPHILA_2:1639011_A_AT dm
DROSGENOME1:152395_AT dm
HG-U133A:217806_S_AT polymerase (DNA-directed), delta interacting protein 2 hs
HG-U133_PLUS_2:217806_S_AT polymerase (DNA-directed), delta interacting protein 2 hs
HG-U133A_2:217806_S_AT polymerase (DNA-directed), delta interacting protein 2 hs
HG-U133B:222425_S_AT polymerase (DNA-directed), delta interacting protein 2 hs
HG-U133_PLUS_2:222425_S_AT polymerase (DNA-directed), delta interacting protein 2 hs
HU35KSUBA:RC_AA234061_AT polymerase (DNA-directed), delta interacting protein 2 hs
HU35KSUBD:RC_AA402631_AT polymerase (DNA-directed), delta interacting protein 2 hs
U133_X3P:G7661671_3P_A_AT polymerase (DNA-directed), delta interacting protein 2 hs
U133_X3P:HS.241543.0.S1_3P_A_AT polymerase (DNA-directed), delta interacting protein 2 hs
HG-U95B:43407_AT polymerase (DNA-directed), delta interacting protein 2 hs
HG-U95B:43408_G_AT polymerase (DNA-directed), delta interacting protein 2 hs
HG-U95C:65810_AT polymerase (DNA-directed), delta interacting protein 2 hs
MG-U74AV2:99636_AT polymerase (DNA-directed), delta interacting protein 2 mm
MG-U74BV2:165268_I_AT polymerase (DNA-directed), delta interacting protein 2 mm
MOE430A:1450727_A_AT polymerase (DNA-directed), delta interacting protein 2 mm
MOUSE430A_2:1450727_A_AT polymerase (DNA-directed), delta interacting protein 2 mm
MOUSE430_2:1450727_A_AT polymerase (DNA-directed), delta interacting protein 2 mm
MOE430A:1422732_AT polymerase (DNA-directed), delta interacting protein 2 mm
MOUSE430A_2:1422732_AT polymerase (DNA-directed), delta interacting protein 2 mm
MOUSE430_2:1422732_AT polymerase (DNA-directed), delta interacting protein 2 mm
MU19KSUBA:TC23866_AT Polymerase (DNA-directed), delta interacting protein 2, mRNA (cDNA clone MGC:19029 IMAGE:4166791) mm
MU19KSUBC:TC39683_AT Polymerase (DNA-directed), delta interacting protein 2, mRNA (cDNA clone MGC:19029 IMAGE:4166791) mm
RG-U34B:RC_AA851255_AT polymerase (DNA-directed), delta interacting protein 2 (predicted) rn
RG-U34C:RC_AI177902_S_AT polymerase (DNA-directed), delta interacting protein 2 (predicted) rn
RG-U34C:RC_AI232159_AT polymerase (DNA-directed), delta interacting protein 2 (predicted) rn
RAE230A:1371920_AT polymerase (DNA-directed), delta interacting protein 2 (predicted) rn
RAT230_2:1371920_AT polymerase (DNA-directed), delta interacting protein 2 (predicted) rn
RAE230B:1383037_AT polymerase (DNA-directed), delta interacting protein 2 (predicted) rn
RAT230_2:1383037_AT polymerase (DNA-directed), delta interacting protein 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK93870 Temporarily assigned gene name protein 307 [Caenorhabditis elegans] ref|NP_498703.2| Temporarily Assigned Gene name family member (tag-307) [Caenorhabditis elegans] 0.0
blast CAE66877 Hypothetical protein CBG12255 [Caenorhabditis briggsae] 0.0
blast CAE66877 Hypothetical protein CBG12255 [Caenorhabditis briggsae] 1.0E-175
blast NP_080665 polymerase delta interacting protein 38 [Mus musculus] gb|AAH12879.1| Polymerase delta interacting protein 38 [Mus musculus] gb|AAH06833.1| Polymerase delta interacting protein 38 [Mus musculus] emb|CAI25551.1| novel protein similar to human polymerase (DNA-directed), delta 4 POLD4 [Mus musculus] sp|Q91VA6|PDIP2_MOUSE Polymerase delta interacting protein 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007474 EMBL-EBI Protein of unknown function DUF525 3.5E-8
Pfam IPR007474 EMBL-EBI Protein of unknown function DUF525 3.5E-8
Pfam IPR007474 EMBL-EBI Protein of unknown function DUF525 2.6E-12
Pfam IPR007474 EMBL-EBI Protein of unknown function DUF525 3.5E-8
Pfam IPR007474 EMBL-EBI Protein of unknown function DUF525 2.6E-12
Sequence
Target Sequence 
>C. ELEGANS:176043_AT
gaagatattatcccatttactccatccggaggtgtcaattttgaccacgatctcttcgac
cacattttcaacgcatctcacgatggcattggactttatgatattgcaatgaagccagaa
cttgttgaaagatacacaaatccaaacagatcatggcttggacctcgtgacgtctatcgg
gaaagaactgaaaacatagaagtaactgtgatgactttctatcttggtgccaatatggtt
ggtggacagcagcagcatatgtggagatatgtcatcaggatcgagaataaaaaaccagaa
aacggggtgattttaagagaaagaacactcaaggtatattcattaaacaatatgaatcaa
atgcatggacatggtgtcgtgggaaagcaacctgaattgaacgcagcaactccggctttc
caattcagcagtacacttgaactgaaacatacgaaaggcggacacatgtggggtcgtttt
aaaatggaaagggagaacggcgttcttttcgacgttcacattcctacaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATATTATCCCATTTACTCCAT 27 339 1228 Antisense
TCAATTTTGACCACGATCTCTTCGA 397 633 1262 Antisense
CCACATTTTCAACGCATCTCACGAT 618 275 1287 Antisense
GCATCTCACGATGGCATTGGACTTT 429 309 1300 Antisense
AACAGATCATGGCTTGGACCTCGTG 159 137 1372 Antisense
GACCTCGTGACGTCTATCGGGAAAG 72 383 1388 Antisense
GATGACTTTCTATCTTGGTGCCAAT 683 409 1437 Antisense
TGAATTGAACGCAGCAACTCCGGCT 222 571 1620 Antisense
CTCCGGCTTTCCAATTCAGCAGTAC 222 235 1637 Antisense
AAGGCGGACACATGTGGGGTCGTTT 494 159 1682 Antisense
TTTCGACGTTCACATTCCTACAATC 641 667 1734 Antisense
Sequence Source Affymetrix Proprietary Database