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[176040_s_at]

Description ZK688.6 /REP_DB=WormBase Gene ID /WP=CE00464 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 52      6grp_total > 61      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 469
1 2 3 4 range
A 561.4
(0)
P 		736.3
(3)
P 		648.4
(1.5)
P 		385.4
(-3)
P 		351
B 502.5
(-0.3)
P 		756.3
(3)
P 		713.6
(2.4)
P 		294.3
(-3)
P 		462
C 596.2
(0.8)
P 		700.7
(2.2)
P 		763.4
(3)
P 		298.4
(-3)
P 		465
avr 553.4
(0.4) 		731.1
(3) 		708.5
(2.7) 		326
(-3) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 796
1 2 3 4 5 6 range
A 449.2
(-1.8)
P 		587.3
(-0.8)
P 		1029.5
(2.5)
P 		1090.7
(3)
P 		534.5
(-1.2)
P 		294.8
(-3)
P 		796
B 467.5
(-1.7)
P 		684.8
(0.3)
P 		962
(3)
P 		753.2
(1)
P 		682
(0.3)
P 		337.1
(-3)
P 		625
C 510.9
(-1.9)
P 		725.9
(0.9)
P 		787.5
(1.7)
P 		883.6
(3)
P 		515.7
(-1.8)
P 		423.8
(-3)
P 		460
avr 475.9
(-1.7) 		666
(0.3) 		926.3
(3) 		909.2
(2.8) 		577.4
(-0.6) 		351.9
(-3) 		574
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 204.4
(3)
P 		159.8
(1.2)
P 		169.5
(1.6)
P 		56.4
(-3)
P 		148
B 160.2
(1.7)
P 		186.8
(3)
P 		165.4
(2)
P 		62.7
(-3)
P 		124
C 197.4
(1.1)
P 		201.5
(1.2)
P 		266.1
(3)
P 		50.3
(-3)
P 		216
avr 187.3
(2.5) 		182.7
(2.3) 		200.3
(3) 		56.5
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 82.8
(-2.7)
P 		208.9
(1)
P 		224.2
(1.5)
P 		276.6
(3)
P 		161.3
(-0.4)
P 		71.8
(-3)
P 		205
B 162.7
(-1.5)
P 		227.9
(1.1)
P 		233.6
(1.3)
P 		199.5
(-0.1)
P 		277.1
(3)
P 		125.7
(-3)
P 		151
C 189.4
(0.6)
P 		221.5
(3)
P 		200.4
(1.4)
P 		177.7
(-0.3)
P 		166.9
(-1.1)
P 		141.9
(-3)
P 		80
avr 145
(-1.2) 		219.4
(3) 		219.4
(3) 		217.9
(2.9) 		201.8
(2) 		113.1
(-3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176040_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7193
Sequence Type Exemplar sequence
Representative Public ID ZK688.6 NCBI
Target Description ZK688.6 /REP_DB=WormBase Gene ID /WP=CE00464 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066318(11), NM_066317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066318 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-282) (tag-282) mRNA, complete cds. 11/11 None
NM_066317 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-282) (tag-282) mRNA, complete cds. 11/11 None
SNAP00000043629 ENSEMBL cdna:SNAP chromosome:CEL140:III:7904927:7907288:-1 11/11 None
GENEFINDER00000043639 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7904927:7907288:-1 11/11 None
ZK688.6a.2 ENSEMBL cdna:known chromosome:CEL140:III:7904881:7907288:-1 gene:ZK688.6 11/11 None
ZK688.6a.1 ENSEMBL cdna:known chromosome:CEL140:III:7904881:7907479:-1 gene:ZK688.6 11/11 None
ZK688.6a.3 ENSEMBL cdna:known chromosome:CEL140:III:7904907:7907290:-1 gene:ZK688.6 11/11 None
ZK688.6b ENSEMBL cdna:known chromosome:CEL140:III:7904927:7907767:-1 gene:ZK688.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7904924-7907286(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK688.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11487 Temporarily assigned gene name protein 282, isoform b [Caenorhabditis elegans] ref|NP_498718.1| Temporarily Assigned Gene name family member (tag-282) [Caenorhabditis elegans] 0.0
blast AAA28227 Temporarily assigned gene name protein 282, isoform a [Caenorhabditis elegans] ref|NP_498719.1| Temporarily Assigned Gene name family member (tag-282) [Caenorhabditis elegans] sp|P34676|YO26_CAEEL Putative serine protease Z688.6 precursor 0.0
blast CAE66880 Hypothetical protein CBG12259 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176040_S_AT
gcctggccagtcaaggaagcctgcaaatctgcaagtcaaccaggaaaaacacaagaagaa
tctgcagaacaactgtacaaaattgtcaacctgtactacaattacacaggagacaagtca
acgcattgtgcaaatgcagcgaaatgtgatagtgcatatggatcattaggtgatccattg
ggatggccatttcaaacatgtacggaaatggttatgccactgtgtggaagtggatatcca
aatgatttcttctggaaggattgtccatttacatcagagaaatatgcagagttctgcatg
caaacgttctcctcgatccattacaacaaaactcttcttcgcccattagccggtggcctt
gcatttggagcaacttctcttccatctgcatccaatattgtcttctcgaatggttacctg
gatccatggagtggtggtggctacgatcattccgataaggtacagggatcagtgattagt
gtaattctgaaacaaggagctcatcattatgatttacgtggagctcatccacaggatacc
gaagaagttaaaaaggttcgagccatggagacgcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTGGCCAGTCAAGGAAGCCTGCA 319 283 907 Antisense
GGGATGGCCATTTCAAACATGTACG 483 493 1086 Antisense
GTTCTCCTCGATCCATTACAACAAA 491 443 1212 Antisense
CATTACAACAAAACTCTTCTTCGCC 669 215 1225 Antisense
CATTAGCCGGTGGCCTTGCATTTGG 665 215 1250 Antisense
CTCTTCCATCTGCATCCAATATTGT 13 231 1283 Antisense
ATTGTCTTCTCGAATGGTTACCTGG 629 3 1303 Antisense
GGTTACCTGGATCCATGGAGTGGTG 293 505 1318 Antisense
GGAGTGGTGGTGGCTACGATCATTC 257 517 1334 Antisense
GGAGCTCATCCACAGGATACCGAAG 8 521 1426 Antisense
AAGGTTCGAGCCATGGAGACGCAGG 68 161 1459 Antisense
Sequence Source Affymetrix Proprietary Database