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[176039_at]

Description Y55F3C.D /REP_DB=WormBase Gene ID /WP=CE22562 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 21      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 4.9
(-3)
A 		12.3
(0.7)
A 		14.7
(1.9)
A 		17
(3)
A 		12
B 8.6
(-3)
A 		12.3
(-2.6)
A 		13.3
(-2.5)
A 		67.6
(3)
A 		59
C 10.7
(-3)
A 		18.3
(3)
A 		13
(-1.2)
A 		11.4
(-2.4)
A 		8
avr 8.1
(-3) 		14.3
(-1.4) 		13.7
(-1.6) 		32
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6
(-1.5)
A 		4.3
(-3)
A 		10.7
(2.7)
A 		11
(3)
A 		8.5
(0.8)
A 		8.5
(0.8)
A 		7
B 9.5
(-1.6)
A 		28.3
(3)
A 		23
(1.7)
A 		3.8
(-3)
A 		7.6
(-2.1)
A 		4.1
(-2.9)
A 		25
C 8.7
(1.5)
A 		4.1
(-3)
A 		4.4
(-2.7)
A 		10.2
(3)
A 		7.3
(0.1)
A 		7
(-0.1)
A 		6
avr 8.1
(-1.5) 		12.2
(2.5) 		12.7
(3) 		8.3
(-1.3) 		7.8
(-1.7) 		6.5
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.8
(-3)
A 		2.7
(-0.3)
A 		3.8
(3)
A 		2.5
(-0.9)
A 		2
B 2.7
(-3)
A 		3
(-2.8)
A 		3.1
(-2.8)
A 		14.4
(3)
A 		12
C 3.5
(-0.1)
A 		5.2
(3)
A 		4.5
(1.7)
A 		1.9
(-3)
A 		3
avr 2.7
(-3) 		3.6
(-1.5) 		3.8
(-1.2) 		6.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.5
(-1.6)
A 		2.3
(1.2)
A 		2.8
(3)
A 		2.6
(2.3)
A 		2.1
(0.5)
A 		2
B 3.3
(-1.4)
A 		9.4
(3)
A 		5.6
(0.3)
A 		1
(-3)
A 		3.1
(-1.5)
A 		1.5
(-2.6)
A 		8
C 3.2
(3)
A 		1.3
(-2.4)
A 		1.1
(-3)
A 		2.1
(-0.1)
A 		2.4
(0.7)
A 		2.4
(0.7)
A 		2
avr 2.5
(-1.6) 		4.1
(3) 		3
(-0.1) 		2
(-3) 		2.7
(-1) 		2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19296
Sequence Type Exemplar sequence
Representative Public ID Y55F3C.D NCBI
Target Description Y55F3C.D /REP_DB=WormBase Gene ID /WP=CE22562 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067574 NCBI Caenorhabditis elegans Y55F3C.5 (Y55F3C.5) mRNA, complete cds. 11/11 None
SNAP00000015001 ENSEMBL cdna:SNAP chromosome:CEL140:IV:716626:717700:1 11/11 None
GENEFINDER00000015014 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:716797:717700:1 11/11 None
Y55F3C.5 ENSEMBL cdna:known chromosome:CEL140:IV:716797:717700:1 gene:Y55F3C.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015009 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:716802-717706(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3C.5
Entrez Gene 190323 Entrez gene
SwissProt Q95XW1 EMBL-EBI
WormBase CE22562 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK72076 Hypothetical protein Y55F3C.5 [Caenorhabditis elegans] ref|NP_499975.1| Y55F3C.5 [Caenorhabditis elegans] 1.0E-111
blast AAK72076 Hypothetical protein Y55F3C.5 [Caenorhabditis elegans] ref|NP_499975.1| Y55F3C.5 [Caenorhabditis elegans] 1.0E-103
blast CAI58637 Hypothetical protein H02K04.2 [Caenorhabditis elegans] emb|CAI58661.1| Hypothetical protein H02K04.2 [Caenorhabditis elegans] ref|NP_001024005.1| H02K04.2 [Caenorhabditis elegans] 7.0E-23
blast CAI58637 Hypothetical protein H02K04.2 [Caenorhabditis elegans] emb|CAI58661.1| Hypothetical protein H02K04.2 [Caenorhabditis elegans] ref|NP_001024005.1| H02K04.2 [Caenorhabditis elegans] 1.0E-22
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 4.0E-22
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 7.0E-22
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:176039_AT
atgtgcatcgcagcgtttcatgataacagttcgaagtaccaacttctcaccgacgttcaa
aactcttgcaccaaggcgcccaactgccttgcattcacagaatctcaatacaacatcgcc
atagtttttatgaacaacactagcaatgaatgttcagctaacacgaccgaattgctcact
gaaaagtttaaaccaaaagaatgtccggctaaatggtttccatggactcgcccgaatggc
caaatatggtgtcatatgatttctagcgtcggaaggacttatcaggaagcaagtgattac
tgtcaaggaatgggagccgagatgaatggatttcagactgttgaggagagaaatgcattt
attggtgggaaactaggtttaatgttccaatggcaaaatggagtgtccaccaatcacagt
cttgcaaacgacaatttctactcaccgtggtgggagggactcggaaattgcttggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCATCGCAGCGTTTCATGATA 520 47 13 Antisense
TCGAAGTACCAACTTCTCACCGACG 92 601 43 Antisense
CACCGACGTTCAAAACTCTTGCACC 406 201 60 Antisense
CCCAACTGCCTTGCATTCACAGAAT 172 259 91 Antisense
CTAACACGACCGAATTGCTCACTGA 659 225 170 Antisense
GAATGTCCGGCTAAATGGTTTCCAT 689 331 211 Antisense
ATGGACTCGCCCGAATGGCCAAATA 220 47 234 Antisense
GGTGTCATATGATTTCTAGCGTCGG 101 501 260 Antisense
TGTCCACCAATCACAGTCTTGCAAA 395 557 416 Antisense
ACGACAATTTCTACTCACCGTGGTG 299 93 440 Antisense
GGGAGGGACTCGGAAATTGCTTGGG 99 495 464 Antisense
Sequence Source Affymetrix Proprietary Database