[Home] | [Total List]

[176038_at]

Description Y41D4B.Y /REP_DB=WormBase Gene ID /WP=CE26099 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 0      6grp_total > 09      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 103.1
(3)
P 		67.6
(-3)
M 		72.4
(-2.2)
P 		70.6
(-2.5)
P 		36
B 51.4
(0.7)
P 		60.3
(3)
P 		41.2
(-1.8)
A 		36.6
(-3)
A 		24
C 96.1
(3)
P 		56.6
(-0.5)
A 		28.1
(-3)
A 		94.8
(2.9)
P 		68
avr 83.5
(3) 		61.5
(-0.6) 		47.2
(-3) 		67.3
(0.3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 47.2
(0.7)
A 		23.9
(-3)
A 		43
(0.1)
P 		61.4
(3)
P 		31.7
(-1.8)
A 		44.9
(0.4)
A 		38
B 62
(3)
P 		34.4
(-2.1)
P 		33.5
(-2.2)
A 		29.3
(-3)
A 		36.2
(-1.7)
P 		53.3
(1.4)
P 		33
C 43.6
(-0.8)
M 		51.4
(1.2)
P 		58.2
(3)
P 		55
(2.2)
M 		55
(2.2)
P 		35.1
(-3)
A 		23
avr 50.9
(3) 		36.6
(-3) 		44.9
(0.5) 		48.6
(2) 		41
(-1.2) 		44.4
(0.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 37.5
(3)
P 		14.7
(-2)
M 		18.9
(-1.1)
P 		10.3
(-3)
P 		27
B 16.4
(3)
P 		14.9
(2)
P 		9.6
(-1.7)
A 		7.8
(-3)
A 		9
C 31.8
(3)
P 		16.3
(-1.2)
A 		9.8
(-3)
A 		16
(-1.3)
P 		22
avr 28.6
(3) 		15.3
(-1.6) 		12.8
(-2.5) 		11.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.7
(-2.8)
A 		8.5
(-3)
A 		9.4
(-2.2)
P 		15.6
(3)
P 		9.6
(-2.1)
A 		10.9
(-1)
A 		7
B 21.6
(3)
P 		11.4
(-1.4)
P 		8.1
(-2.9)
A 		7.8
(-3)
A 		14.7
(-0)
P 		19.9
(2.3)
P 		14
C 16.2
(1.6)
M 		15.7
(1.1)
P 		14.8
(0.3)
P 		11.1
(-3)
M 		17.8
(3)
P 		11.7
(-2.5)
A 		7
avr 15.5
(3) 		11.9
(-1.6) 		10.8
(-3) 		11.5
(-2.1) 		14
(1.1) 		14.2
(1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19315
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.Y NCBI
Target Description Y41D4B.Y /REP_DB=WormBase Gene ID /WP=CE26099 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067715(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067715 NCBI Caenorhabditis elegans Y41D4B.4 (Y41D4B.4) mRNA, complete cds. 10/11 A 
SNAP00000005524 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1660706:1672173:1 10/11 None
GENEFINDER00000005545 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1665868:1669978:1 10/11 None
Y41D4B.4 ENSEMBL cdna:known chromosome:CEL140:IV:1660110:1669681:1 gene:Y41D4B.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1666407-1667970(+) 88.89 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.4
Entrez Gene 176976 Entrez gene
SwissProt Q8WSN7 EMBL-EBI
WormBase CE37566 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68478 Hypothetical protein Y41D4B.4 [Caenorhabditis elegans] ref|NP_500116.3| Y41D4B.4 [Caenorhabditis elegans] 0.0
blast CAE67975 Hypothetical protein CBG13581 [Caenorhabditis briggsae] 1.0E-142
blast AAK68478 Hypothetical protein Y41D4B.4 [Caenorhabditis elegans] ref|NP_500116.3| Y41D4B.4 [Caenorhabditis elegans] 1.0E-111
blast CAE67975 Hypothetical protein CBG13581 [Caenorhabditis briggsae] 7.0E-60
Sequence
Target Sequence 
>C. ELEGANS:176038_AT
tccctccggacaccgtgaggcaaagatcttcgccacaagattcctgcacgacaatcagaa
taatgttcaagcaaagctcctgaaagtgcatgttctcgtaaacggagtaagccgaaatcc
cgacgcaaatcacacgaaagagctctttcaactgctggaggacgttatcacggagcatcc
acacattctcgcggcctactgtttcctgctcaacgagtacgcgaggcttaagaacagcga
caagtgcaacgagattttggagaagctcaccgcggcgagacccttgatttcacagggaaa
aacacataaattccataaaatgaaagcggattatttgctgaaaacgagagatgttatacc
ggcttatgagcatttgatggcggcttttgccactggagcaatggttgatcaggctatgat
tgccaactacgaatcggaatttctgtcgacaaaagccgtcgccggtgattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTCCGGACACCGTGAGGCAAAG 641 595 69 Antisense
AGATCTTCGCCACAAGATTCCTGCA 140 67 92 Antisense
AGCTCCTGAAAGTGCATGTTCTCGT 698 79 143 Antisense
AGTAAGCCGAAATCCCGACGCAAAT 325 59 174 Antisense
AGAGCTCTTTCAACTGCTGGAGGAC 39 71 207 Antisense
GAGGACGTTATCACGGAGCATCCAC 12 405 226 Antisense
TCCTGCTCAACGAGTACGCGAGGCT 537 583 272 Antisense
CGGCGAGACCCTTGATTTCACAGGG 521 239 341 Antisense
GAGATGTTATACCGGCTTATGAGCA 692 395 416 Antisense
TTGATGGCGGCTTTTGCCACTGGAG 153 701 442 Antisense
GACAAAAGCCGTCGCCGGTGATTAT 359 363 516 Antisense
Sequence Source Affymetrix Proprietary Database