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[176036_at]

Description B0403.1 /REP_DB=WormBase Gene ID /WP=CE03881 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 24.6
(-2.4)
A 		48
(-0.7)
A 		15.8
(-3)
A 		101
(3)
A 		85
B 25.2
(-3)
A 		55.8
(3)
P 		44.1
(0.7)
A 		27.2
(-2.6)
A 		31
C 25.1
(-2.6)
A 		24.2
(-2.7)
A 		20.2
(-3)
A 		104
(3)
P 		84
avr 25
(-3) 		42.7
(-1) 		26.7
(-2.8) 		77.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 58.8
(3)
A 		28.8
(-1.7)
A 		39.2
(-0)
P 		20.5
(-3)
A 		20.2
(-3)
A 		32.9
(-1)
A 		39
B 24.3
(1.5)
A 		25.4
(1.7)
A 		31.7
(3)
P 		1.7
(-3)
A 		14.9
(-0.4)
A 		21.5
(1)
A 		30
C 3.3
(-3)
A 		57.8
(3)
A 		10.4
(-2.2)
A 		53.1
(2.5)
A 		15
(-1.7)
A 		17.5
(-1.4)
A 		55
avr 28.8
(0.5) 		37.3
(3) 		27.1
(0) 		25.1
(-0.6) 		16.7
(-3) 		24
(-0.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(-0.3)
A 		10.4
(0.5)
A 		4.1
(-3)
A 		14.8
(3)
A 		11
B 8
(-1.4)
A 		13.8
(3)
P 		10.2
(0.3)
A 		5.8
(-3)
A 		8
C 8.3
(-2.2)
A 		6.9
(-3)
A 		7
(-2.9)
A 		17.5
(3)
P 		11
avr 8.4
(-1.6) 		10.4
(0.5) 		7.1
(-3) 		12.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.8
(3)
A 		10.2
(2.4)
A 		8.5
(0.5)
P 		5.2
(-3)
A 		6.1
(-2)
A 		8
(-0)
A 		6
B 8.5
(3)
A 		8.4
(2.9)
A 		7.7
(2.4)
P 		0.4
(-3)
A 		6.1
(1.2)
A 		8
(2.6)
A 		8
C 1.2
(-3)
A 		17.6
(3)
A 		2.7
(-2.5)
A 		10.7
(0.5)
A 		4.8
(-1.7)
A 		5.9
(-1.3)
A 		16
avr 6.8
(-1.7) 		12.1
(3) 		6.3
(-2.2) 		5.4
(-3) 		5.7
(-2.7) 		7.3
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16997
Sequence Type Exemplar sequence
Representative Public ID B0403.1 NCBI
Target Description B0403.1 /REP_DB=WormBase Gene ID /WP=CE03881 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076790 NCBI Caenorhabditis elegans B0403.1 (B0403.1) mRNA, complete cds. 11/11 A 
B0403.1 ENSEMBL cdna:known chromosome:CEL140:X:7068829:7069737:1 gene:B0403.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032669 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7068827-7069736(+) 30.99 100.0
Public Domain and Genome References
Gene Title
Ensembl B0403.1
Entrez Gene 181978 Entrez gene
SwissProt Q11075 EMBL-EBI
WormBase CE03881 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47064 Hypothetical protein B0403.1 [Caenorhabditis elegans] ref|NP_509191.1| B0403.1 [Caenorhabditis elegans] sp|Q11075|YWV1_CAEEL Hypothetical protein B0403.1 in chromosome X 1.0E-112
blast AAF39884 Hypothetical protein H18N23.1 [Caenorhabditis elegans] ref|NP_510847.1| H18N23.1 [Caenorhabditis elegans] 2.0E-68
blast AAP13750 Hypothetical protein Y52E8A.6 [Caenorhabditis elegans] ref|NP_001022461.1| Y52E8A.6 [Caenorhabditis elegans] 4.0E-56
Sequence
Target Sequence 
>C. ELEGANS:176036_AT
gtcaacgatctagacattttcgtggattgcaagctaaacttccaaaaacatatcgaatat
gtatcaaattctgctttcctcaagtgtagacagcttcttcgatgctttcgctttaccaat
gtcagtttgtactttaagttatacaacgtttacgttcaaccgctgctgaattacggatgt
gaggtctacaaccctaactccaaacgtctgataaagctacttgaaatgccgctgaaattc
tattcaagaagagtgtatcaacgatgcaatgtctcaaacacgtcgtacgatgatcgactg
gctcagtcaaatcaaaaatccattcaacaccagcgaattctccaaatattaaggacctac
cacaacatcttatctggcgaataccattttccggatgtctcagcactaaagaattcctcg
gcaattcccgacagcttcttccccaagtttgggccttttcagcttcttacccaactcttg
ccaacttctaacccagagtatgcccaagtcttacccaacttcagcaattctagtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAACGATCTAGACATTTTCGTGG 688 459 40 Antisense
ATGTGAGGTCTACAACCCTAACTCC 399 47 216 Antisense
CCCTAACTCCAAACGTCTGATAAAG 688 257 231 Antisense
CAAACGTCTGATAAAGCTACTTGAA 110 193 240 Antisense
GATGCAATGTCTCAAACACGTCGTA 399 413 302 Antisense
AAACACGTCGTACGATGATCGACTG 164 127 315 Antisense
CTCAGCACTAAAGAATTCCTCGGCA 350 229 438 Antisense
TAAAGAATTCCTCGGCAATTCCCGA 24 641 446 Antisense
CCAACTTCTAACCCAGAGTATGCCC 243 275 520 Antisense
ACCCAGAGTATGCCCAAGTCTTACC 479 87 530 Antisense
ACCCAACTTCAGCAATTCTAGTGTA 30 91 552 Antisense
Sequence Source Affymetrix Proprietary Database