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[176035_at]

Description Y41D4B.C /REP_DB=WormBase Gene ID /WP=CE21856 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 28      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 146.9
(1.7)
P 		81.3
(-2.7)
M 		77
(-3)
P 		166.3
(3)
P 		89
B 113.9
(-0.4)
P 		83.7
(-1.6)
A 		47.4
(-3)
A 		198.2
(3)
P 		151
C 94.6
(-0.2)
P 		68.9
(-1.9)
A 		51.7
(-3)
P 		143.2
(3)
P 		92
avr 118.5
(0.2) 		78
(-2) 		58.7
(-3) 		169.2
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 97
(3)
M 		66.7
(-0.4)
A 		57.6
(-1.5)
A 		58.5
(-1.4)
A 		44.1
(-3)
A 		76.1
(0.6)
A 		53
B 104.6
(3)
P 		59.1
(-1)
P 		74.2
(0.3)
P 		36.7
(-3)
A 		50.4
(-1.8)
P 		58.3
(-1.1)
A 		68
C 74.4
(2.7)
P 		57.1
(0.3)
P 		33.1
(-3)
A 		33.1
(-3)
A 		76.2
(3)
P 		61.1
(0.9)
A 		43
avr 92
(3) 		61
(-0.8) 		55
(-1.5) 		42.8
(-3) 		56.9
(-1.3) 		65.2
(-0.3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 53.5
(3)
P 		17.6
(-3)
M 		20.1
(-2.6)
P 		24.3
(-1.9)
P 		36
B 36.3
(1.9)
P 		20.7
(-1.1)
A 		11
(-3)
A 		42.2
(3)
P 		31
C 31.3
(3)
P 		19.8
(-2.2)
A 		18
(-3)
P 		24.1
(-0.2)
P 		13
avr 40.4
(3) 		19.4
(-2.3) 		16.4
(-3) 		30.2
(0.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.9
(-0.1)
M 		23.7
(3)
A 		12.5
(-3)
A 		14.8
(-1.8)
A 		13.3
(-2.6)
A 		18.5
(0.2)
A 		11
B 36.4
(3)
P 		19.7
(-0.8)
P 		18
(-1.1)
P 		9.7
(-3)
A 		20.5
(-0.6)
P 		21.7
(-0.3)
A 		27
C 27.6
(3)
P 		17.4
(0.1)
P 		8.4
(-2.5)
A 		6.7
(-3)
A 		24.6
(2.1)
P 		20.4
(0.9)
A 		21
avr 27.3
(3) 		20.3
(0.5) 		13
(-2.1) 		10.4
(-3) 		19.5
(0.2) 		20.2
(0.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19355
Sequence Type Exemplar sequence
Representative Public ID Y41D4B.C NCBI
Target Description Y41D4B.C /REP_DB=WormBase Gene ID /WP=CE21856 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067719 NCBI Caenorhabditis elegans Y41D4B.22 (Y41D4B.22) mRNA, complete cds. 11/11 None
GENEFINDER00000005538 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1676718:1682524:-1 11/11 None
Y41D4B.22 ENSEMBL cdna:known chromosome:CEL140:IV:1676718:1677442:-1 gene:Y41D4B.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1676723-1677448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4B.22
Entrez Gene 189826 Entrez gene
SwissProt Q95Y01 EMBL-EBI
WormBase CE21856 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE67977 Hypothetical protein CBG13583 [Caenorhabditis briggsae] 1.0E-146
blast AAK68476 Hypothetical protein Y41D4B.24 [Caenorhabditis elegans] ref|NP_500122.2| Y41D4B.24 [Caenorhabditis elegans] 1.0E-117
blast CAA98450 Hypothetical protein F32D8.10 [Caenorhabditis elegans] ref|NP_505783.1| F32D8.10 [Caenorhabditis elegans] 3.0E-58
blast AAK68474 Hypothetical protein Y41D4B.22 [Caenorhabditis elegans] ref|NP_500120.1| Y41D4B.22 [Caenorhabditis elegans] 5.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005538 7 123-145,158-180,200-222,243-262,299-321,355-377,392-414
Sequence
Target Sequence 
>C. ELEGANS:176035_AT
ccttccaatttacctgtactgtcagccagttcttcgccgtgaaattctgtgtcgtttcaa
acgactctgtgttccatgtaacccgagagcagacgaaaaatacgtggaacgtctgaaatc
cgtggaaaccgacacgagctttttgagtagaggagatgcaaatcattctgaaacaatgcc
gattgccacaatttcggagcctcggaataagcacaaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCCAATTTACCTGTACTGTCAG 167 269 30 Antisense
TACCTGTACTGTCAGCCAGTTCTTC 158 651 40 Antisense
CGCCGTGAAATTCTGTGTCGTTTCA 115 255 64 Antisense
GTTTCAAACGACTCTGTGTTCCATG 663 447 83 Antisense
TGTGTTCCATGTAACCCGAGAGCAG 552 553 97 Antisense
GAACGTCTGAAATCCGTGGAAACCG 612 347 136 Antisense
GGAAACCGACACGAGCTTTTTGAGT 34 529 153 Antisense
GAGGAGATGCAAATCATTCTGAAAC 62 405 179 Antisense
ATTCTGAAACAATGCCGATTGCCAC 173 9 194 Antisense
CGATTGCCACAATTTCGGAGCCTCG 99 249 209 Antisense
GGAGCCTCGGAATAAGCACAAATGC 95 521 225 Antisense
Sequence Source Affymetrix Proprietary Database