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[176033_at] 7TM chemoreceptor, srt family

Description M02H5.2 /REP_DB=WormBase Gene ID /WP=CE25951 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 27      6grp_cgc > 65      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 34.1
(-0.2)
A 		54.9
(2)
A 		6.6
(-3)
A 		64.8
(3)
A 		58
B 43.6
(0.3)
A 		56.2
(3)
A 		47.3
(1.1)
P 		27.8
(-3)
A 		28
C 41.1
(-2.9)
A 		52
(-1.7)
A 		39.9
(-3)
A 		95.6
(3)
A 		56
avr 39.6
(-1.4) 		54.4
(1.4) 		31.3
(-3) 		62.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 10.7
(-2.3)
A 		6.6
(-3)
A 		26.4
(0.3)
A 		10.4
(-2.4)
A 		20.4
(-0.7)
A 		42.2
(3)
A 		36
B 11.9
(-3)
A 		36.6
(0.4)
A 		44.4
(1.5)
A 		55.4
(3)
A 		25
(-1.2)
A 		25
(-1.2)
A 		44
C 19
(-1)
A 		47.6
(3)
A 		6.7
(-2.7)
A 		7
(-2.6)
A 		34.9
(1.2)
A 		4.2
(-3)
A 		43
avr 13.9
(-3) 		30.3
(3) 		25.8
(1.4) 		24.3
(0.8) 		26.8
(1.7) 		23.8
(0.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.4
(3)
A 		11.9
(2.7)
A 		1.7
(-3)
A 		9.5
(1.4)
A 		11
B 13.9
(3)
A 		13.9
(3)
A 		10.9
(0.8)
P 		5.9
(-3)
A 		8
C 13.6
(-3)
A 		15
(0.4)
A 		13.9
(-2.3)
A 		16.1
(3)
A 		3
avr 13.3
(2.6) 		13.6
(3) 		8.8
(-3) 		10.5
(-0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2
(-3)
A 		2.3
(-2.8)
A 		5.8
(-0.3)
A 		2.6
(-2.6)
A 		6.1
(-0)
A 		10.3
(3)
A 		8
B 4.1
(-3)
A 		12.2
(1.6)
A 		10.8
(0.8)
A 		14.7
(3)
A 		10.1
(0.4)
A 		9.3
(-0.1)
A 		11
C 7
(-0.4)
A 		14.5
(3)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		11.3
(1.5)
A 		1.4
(-3)
A 		13
avr 4.4
(-3) 		9.7
(3) 		6.1
(-1.1) 		6.2
(-1) 		9.2
(2.4) 		7
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15599
Sequence Type Exemplar sequence
Representative Public ID M02H5.2 NCBI
Target Description M02H5.2 /REP_DB=WormBase Gene ID /WP=CE25951 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070812 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-31) (srt-31) mRNA, complete cds. 11/11 None
SNAP00000034173 ENSEMBL cdna:SNAP chromosome:CEL140:V:472718:474361:1 11/11 None
GENEFINDER00000034177 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:472718:474460:1 11/11 None
M02H5.2 ENSEMBL cdna:known chromosome:CEL140:V:472718:474460:1 gene:M02H5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:472717-474460(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-31
Ensembl M02H5.2
Entrez Gene 187407 Entrez gene
SwissProt Q966H5 EMBL-EBI
WormBase CE25951 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503213 Serpentine Receptor, class T family member (srt-31) [Caenorhabditis elegans] gb|AAK84552.1| Serpentine receptor, class t protein 31 [Caenorhabditis elegans] 0.0
blast NP_503213 Serpentine Receptor, class T family member (srt-31) [Caenorhabditis elegans] gb|AAK84552.1| Serpentine receptor, class t protein 31 [Caenorhabditis elegans] 1.0E-179
blast CAE61716 Hypothetical protein CBG05666 [Caenorhabditis briggsae] 1.0E-119
blast CAE61716 Hypothetical protein CBG05666 [Caenorhabditis briggsae] 1.0E-118
blast CAE62539 Hypothetical protein CBG06648 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.5E-115
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503213.1 7 38-60,73-95,110-132,153-175,202-224,244-263,273-295
M02H5.2 7 38-60,73-95,110-132,153-175,202-224,244-263,273-295
SNAP00000034173 7 38-60,73-95,110-132,153-175,202-224,244-263,273-295
GENEFINDER00000034177 7 38-60,73-95,110-132,153-175,202-224,244-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:176033_AT
tcttcgtgccttgttgcaatgctgcttgttaccaataggctacttgattttacttttaaa
tctgcagccaacttcatgtttgacaaaaatcggacgtttttagttttgattttaccaact
atatacggattgtattttgcaattttcacacctcctttgttatattcttccaagtatttg
ggatggttttttgatccatttatatttcaaggagaaactgctgagtactacaactatcct
catcttgccaataatattattgtcgttgccgtcacatgcttcctctacatcatgttctgt
tgtgctcttggagccgaaatgaagaacgttaacaccggatctgaatcttacaagcgtagc
aagcaaatttttatccaatcggtcttgatttgcggtttcaatctgaccgcatcacttctc
tacgtgtacatgaatttcttcgaagcaccgtactccattgtggtggtcgcacatattaat
tgggagctcggtcatggagctccggcgtttatttatttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTGCCTTGTTGCAATGCTGC 33 617 373 Antisense
GCAATGCTGCTTGTTACCAATAGGC 104 323 388 Antisense
ATCTGCAGCCAACTTCATGTTTGAC 58 35 432 Antisense
ACACCTCCTTTGTTATATTCTTCCA 174 109 520 Antisense
AGTACTACAACTATCCTCATCTTGC 267 63 596 Antisense
ATATTATTGTCGTTGCCGTCACATG 356 19 626 Antisense
CTACATCATGTTCTGTTGTGCTCTT 337 227 657 Antisense
GAACGTTAACACCGGATCTGAATCT 678 347 696 Antisense
CGCATCACTTCTCTACGTGTACATG 403 255 780 Antisense
AGCACCGTACTCCATTGTGGTGGTC 162 77 816 Antisense
GGAGCTCCGGCGTTTATTTATTTGG 144 521 868 Antisense
Sequence Source Affymetrix Proprietary Database