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[176032_s_at]

Description C06E1.9 /REP_DB=WormBase Gene ID /WP=CE24790 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 87      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 82      6grp_total > 87      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 422
(1.7)
P 		388.7
(0.4)
P 		299.2
(-3)
P 		457.2
(3)
P 		158
B 493.3
(3)
P 		262.5
(-2.8)
P 		252.7
(-3)
P 		481.8
(2.7)
P 		241
C 423.4
(1.4)
P 		308.5
(-3)
P 		309.5
(-3)
P 		463.6
(3)
P 		155
avr 446.2
(2.3) 		319.9
(-1.9) 		287.1
(-3) 		467.5
(3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 352.3
(0.5)
P 		362.5
(1.1)
P 		292.6
(-3)
P 		390
(2.7)
P 		321.1
(-1.3)
P 		395.1
(3)
P 		103
B 319.8
(-0.5)
P 		277.8
(-3)
P 		327.8
(0)
P 		377
(3)
P 		375.5
(2.9)
P 		369.2
(2.5)
P 		99
C 369.8
(-0.2)
P 		327.8
(-2.8)
P 		368.1
(-0.3)
P 		324.3
(-3)
P 		386.6
(0.8)
P 		423.3
(3)
P 		99
avr 347.3
(-1) 		322.7
(-3) 		329.5
(-2.4) 		363.8
(0.4) 		361.1
(0.1) 		395.9
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 153.7
(3)
P 		84.4
(-1.8)
P 		78.2
(-2.2)
P 		66.9
(-3)
P 		87
B 157.3
(3)
P 		64.8
(-2.6)
P 		58.6
(-3)
P 		102.7
(-0.3)
P 		99
C 140.2
(3)
P 		88.7
(-2)
P 		107.9
(-0.1)
P 		78.2
(-3)
P 		62
avr 150.4
(3) 		79.3
(-3) 		81.6
(-2.8) 		82.6
(-2.7) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 64.9
(-2.9)
P 		128.9
(3)
P 		63.7
(-3)
P 		98.9
(0.2)
P 		96.9
(0.1)
P 		96.2
(-0)
P 		65
B 111.3
(-0.4)
P 		92.5
(-1.9)
P 		79.6
(-3)
P 		99.9
(-1.3)
P 		152.6
(3)
P 		137.7
(1.8)
P 		73
C 137.1
(2.6)
P 		100
(-0.3)
P 		93.7
(-0.8)
P 		65.2
(-3)
P 		125.1
(1.7)
P 		141.7
(3)
P 		77
avr 104.4
(0.3) 		107.1
(0.6) 		79
(-3) 		88
(-1.8) 		124.9
(3) 		125.2
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176032_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7329
Sequence Type Exemplar sequence
Representative Public ID C06E1.9 NCBI
Target Description C06E1.9 /REP_DB=WormBase Gene ID /WP=CE24790 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066493 NCBI Caenorhabditis elegans C06E1.9 (C06E1.9) mRNA, complete cds. 11/11 A 
SNAP00000034822 ENSEMBL cdna:SNAP chromosome:CEL140:III:8606502:8609675:-1 11/11 None
GENEFINDER00000034826 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8606502:8609675:-1 11/11 None
C06E1.9 ENSEMBL cdna:known chromosome:CEL140:III:8606399:8609686:-1 gene:C06E1.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8606496-8609670(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.9
Entrez Gene 176206 Entrez gene
SwissProt P34304 EMBL-EBI
WormBase CE24790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27929 Hypothetical protein C06E1.9 [Caenorhabditis elegans] ref|NP_498894.1| C06E1.9 [Caenorhabditis elegans] sp|P34304|YKQ9_CAEEL Hypothetical protein C06E1.9 in chromosome III 0.0
blast G88533 70.5K hpothetical protein - Caenorhabditis elegans 0.0
blast CAE69280 Hypothetical protein CBG15334 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176032_S_AT
ctccaccagtcgatcagcaagctgaacttcgagcacatgccgaagcctatcggacttcag
ttcttacgaagcttcagaaaatccgagcagatgctgctggaccctcatcgccttctgaaa
aaattgctgttgatgctgagaatcttgttcctcttgcgacttcgaaaaagtattcggcat
tgaactccttaaaaatcagtgaagcagataaagtggcaattcggccaacatataataagt
atcgttacgagaccccgaatgatggagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCACCAGTCGATCAGCAAGCTGA 608 235 1361 Antisense
GCAAGCTGAACTTCGAGCACATGCC 290 321 1377 Antisense
GAGCACATGCCGAAGCCTATCGGAC 233 391 1391 Antisense
AAGCCTATCGGACTTCAGTTCTTAC 378 147 1403 Antisense
TCCGAGCAGATGCTGCTGGACCCTC 146 595 1442 Antisense
ACCCTCATCGCCTTCTGAAAAAATT 304 89 1461 Antisense
TGCTGAGAATCTTGTTCCTCTTGCG 93 583 1494 Antisense
TTGTTCCTCTTGCGACTTCGAAAAA 5 703 1505 Antisense
AAGTATTCGGCATTGAACTCCTTAA 149 157 1528 Antisense
GGCAATTCGGCCAACATATAATAAG 168 533 1575 Antisense
GTTACGAGACCCCGAATGATGGAGG 109 445 1604 Antisense
Sequence Source Affymetrix Proprietary Database