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[176031_s_at]

Description F41G4.5 /REP_DB=WormBase Gene ID /WP=CE04550 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 17.8
(0.6)
A 		21.1
(1.5)
A 		26.8
(3)
A 		4.7
(-3)
A 		22
B 61.6
(3)
A 		8.7
(-2.4)
A 		12.1
(-2.1)
A 		3.2
(-3)
A 		58
C 16.5
(-0.1)
A 		11.5
(-1.3)
A 		29.7
(3)
A 		4.2
(-3)
A 		26
avr 32
(3) 		13.8
(-0.9) 		22.9
(1.1) 		4
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 14
(-1.8)
A 		9.6
(-2.6)
A 		23.7
(-0)
A 		7.3
(-3)
A 		40.1
(3)
A 		8.7
(-2.7)
A 		33
B 7
(-1.8)
A 		7.4
(-1.7)
A 		2.5
(-3)
A 		24.3
(3)
A 		16.8
(0.9)
A 		5.3
(-2.2)
A 		22
C 14.4
(-1.1)
A 		31.9
(3)
A 		10.8
(-1.9)
A 		16.1
(-0.7)
A 		28.6
(2.2)
A 		6.1
(-3)
A 		26
avr 11.8
(-1.6) 		16.3
(-0.4) 		12.3
(-1.5) 		15.9
(-0.5) 		28.5
(3) 		6.7
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.5
(2.5)
A 		4.6
(0.7)
A 		7
(3)
A 		0.7
(-3)
A 		6
B 19.7
(3)
A 		2.2
(-2.5)
A 		2.8
(-2.3)
A 		0.7
(-3)
A 		19
C 5.5
(-0)
A 		3.3
(-1.4)
A 		10.4
(3)
A 		0.7
(-3)
A 		10
avr 10.6
(3) 		3.4
(-1.4) 		6.7
(0.6) 		0.7
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.6
(-2.6)
A 		3.4
(-2.1)
A 		5.2
(-1.1)
A 		1.9
(-3)
A 		12.1
(3)
A 		2.1
(-2.9)
A 		10
B 2.4
(-1.3)
A 		2.5
(-1.2)
A 		0.6
(-3)
A 		6.4
(2.6)
A 		6.8
(3)
A 		2
(-1.6)
A 		6
C 5.3
(-0.4)
A 		9.7
(3)
A 		2.8
(-2.4)
A 		3.2
(-2.1)
A 		9.3
(2.7)
A 		2
(-3)
A 		8
avr 3.4
(-1.9) 		5.2
(-0.4) 		2.9
(-2.3) 		3.8
(-1.5) 		9.4
(3) 		2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176031_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17386
Sequence Type Exemplar sequence
Representative Public ID F41G4.5 NCBI
Target Description F41G4.5 /REP_DB=WormBase Gene ID /WP=CE04550 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075515(11), NM_078316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075515 NCBI Caenorhabditis elegans ZC15.1 (ZC15.1) mRNA, complete cds. 11/11 A 
NM_078316 NCBI Caenorhabditis elegans F41G4.5 (F41G4.5) mRNA, complete cds. 11/11 None
SNAP00000015579 ENSEMBL cdna:SNAP chromosome:CEL140:V:20304154:20306970:1 11/11 None
GENEFINDER00000015581 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20304154:20306970:1 11/11 None
SNAP00000036410 ENSEMBL cdna:SNAP chromosome:CEL140:X:16830904:16832653:-1 11/11 None
GENEFINDER00000036418 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16830904:16832461:-1 11/11 None
ZC15.1 ENSEMBL cdna:known chromosome:CEL140:V:20304154:20306970:1 gene:ZC15.1 11/11 A 
F41G4.5 ENSEMBL cdna:known chromosome:CEL140:X:16830904:16832653:-1 gene:F41G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20304141-20305926(+) 97.95 97.95
chrX:16830903-16832653(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZC15.1
F41G4.5
Entrez Gene 185636 Entrez gene
191050 Entrez gene
SwissProt Q95YA6 EMBL-EBI
O18265 EMBL-EBI
WormBase CE34557 Wormbase
CE16683 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07709 Hypothetical protein ZC15.1 [Caenorhabditis elegans] ref|NP_507916.1| ZC15.1 [Caenorhabditis elegans] 0.0
blast AAK85485 Hypothetical protein F41G4.5 [Caenorhabditis elegans] ref|NP_510717.2| F41G4.5 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176031_S_AT
gcaaggtcaccgacgagtggcacatattccaggaaagtgaagacgcaacccatccgaaca
cgctcaccgacagagcaccgggagaaggaacatccggagctccaacgctgcccccagcag
acgatgaagcggacgaacatcctgcagccgatgatgcggaggagcctcctacagtcgagg
acacggaagatcagagacagaatgaactgacggagattaataaccttggaccagccatgt
ggcattgtgacaaagtcatcatcttggacgaattcccagcacgcccagcattccaagagg
ttccattctacctgttccaacaactaccggaaccagtcgacaaaagaacactgatcatcc
gcatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGGTCACCGACGAGTGGCACAT 455 321 1079 Antisense
GATGCGGAGGAGCCTCCTACAGTCG 188 409 1231 Antisense
AGCCTCCTACAGTCGAGGACACGGA 39 83 1241 Antisense
GAGGACACGGAAGATCAGAGACAGA 363 405 1255 Antisense
GAGATTAATAACCTTGGACCAGCCA 222 397 1291 Antisense
GGACCAGCCATGTGGCATTGTGACA 440 523 1306 Antisense
GCCCAGCATTCCAAGAGGTTCCATT 81 287 1361 Antisense
CAAGAGGTTCCATTCTACCTGTTCC 307 181 1372 Antisense
TCCATTCTACCTGTTCCAACAACTA 456 591 1380 Antisense
CAACAACTACCGGAACCAGTCGACA 247 189 1396 Antisense
AAAAGAACACTGATCATCCGCATCG 30 133 1420 Antisense
Sequence Source Affymetrix Proprietary Database