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[176030_at]

Description C06E1.7 /REP_DB=WormBase Gene ID /WP=CE00062 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 52      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 72      4grp_total > 05      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 36.9
(-3)
P 		65.6
(-0.5)
A 		53.9
(-1.5)
P 		105.3
(3)
P 		68
B 81.6
(3)
P 		53.3
(-3)
P 		53.5
(-3)
P 		66.6
(-0.2)
M 		28
C 73.8
(2.5)
P 		31.7
(-3)
A 		61.5
(0.9)
P 		77.4
(3)
P 		46
avr 64.1
(-0.5) 		50.2
(-3) 		56.3
(-1.9) 		83.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 76.4
(-3)
P 		132.4
(0.1)
P 		179.1
(2.7)
P 		185.1
(3)
P 		129.6
(-0.1)
P 		94.6
(-2)
P 		109
B 65.9
(-3)
P 		152.7
(0.6)
P 		210.5
(3)
P 		174.8
(1.5)
P 		125.5
(-0.5)
P 		72.6
(-2.7)
P 		145
C 46.4
(-3)
P 		176.5
(2.6)
P 		171.3
(2.4)
P 		186.3
(3)
P 		135.3
(0.8)
P 		103.4
(-0.6)
P 		140
avr 62.9
(-3) 		153.9
(1.4) 		187
(3) 		182.1
(2.8) 		130.1
(0.2) 		90.2
(-1.7) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.4
(-3)
P 		14.2
(-0.6)
A 		14.1
(-0.9)
P 		15.4
(3)
P 		2
B 26
(3)
P 		13.2
(-2.6)
P 		12.4
(-3)
P 		14.2
(-2.2)
M 		14
C 24.4
(3)
P 		9.1
(-3)
A 		21.4
(1.8)
P 		13
(-1.5)
P 		15
avr 21.3
(3) 		12.2
(-3) 		16
(-0.5) 		14.2
(-1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.1
(-3)
P 		47.1
(3)
P 		39
(1.5)
P 		47
(3)
P 		39.1
(1.5)
P 		23
(-1.4)
P 		33
B 22.9
(-3)
P 		50.8
(2.9)
P 		51.1
(3)
P 		46.3
(2)
P 		51
(3)
P 		27.1
(-2.1)
P 		28
C 17.2
(-3)
P 		53.9
(3)
P 		43.6
(1.3)
P 		37.5
(0.3)
P 		43.8
(1.3)
P 		34.6
(-0.2)
P 		37
avr 18.1
(-3) 		50.6
(3) 		44.6
(1.9) 		43.6
(1.7) 		44.6
(1.9) 		28.2
(-1.1) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7023
Sequence Type Exemplar sequence
Representative Public ID C06E1.7 NCBI
Target Description C06E1.7 /REP_DB=WormBase Gene ID /WP=CE00062 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066490 NCBI Caenorhabditis elegans C06E1.7 (C06E1.7) mRNA, complete cds. 11/11 None
SNAP00000034818 ENSEMBL cdna:SNAP chromosome:CEL140:III:8590736:8592505:-1 11/11 None
GENEFINDER00000034829 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8590736:8592995:-1 11/11 None
C06E1.7 ENSEMBL cdna:known chromosome:CEL140:III:8591174:8592995:-1 gene:C06E1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8591287-8592990(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.7
Entrez Gene 182316 Entrez gene
SwissProt P34302 EMBL-EBI
WormBase CE30483 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27932 Hypothetical protein C06E1.7 [Caenorhabditis elegans] ref|NP_498891.2| C06E1.7 [Caenorhabditis elegans] sp|P34302|YKQ7_CAEEL Putative glycosyl transferase C06E1.7 in chromosome III 0.0
blast AAA27932 Hypothetical protein C06E1.7 [Caenorhabditis elegans] ref|NP_498891.2| C06E1.7 [Caenorhabditis elegans] sp|P34302|YKQ7_CAEEL Putative glycosyl transferase C06E1.7 in chromosome III 1.0E-138
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-67
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 2.0E-67
blast CAB01447 Hypothetical protein W07G4.2 [Caenorhabditis elegans] ref|NP_506258.1| W07G4.2 [Caenorhabditis elegans] 5.0E-63
blast CAB01447 Hypothetical protein W07G4.2 [Caenorhabditis elegans] ref|NP_506258.1| W07G4.2 [Caenorhabditis elegans] 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.6E-6
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.6E-6
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.6E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498891.2 1 7-26
C06E1.7 1 7-26
SNAP00000034818 1 268-290
GENEFINDER00000034829 2 7-26,369-391
Sequence
Target Sequence 
>C. ELEGANS:176030_AT
gaatatcttcacttgactggtcatttttatcagagttggaaatatttcgataaatacaag
gaaaaagtgcaaagttttgtaaaaccagccattgatttctcgccacttcccaactctgat
agcagtaatttcataatttgcatacacattcggagaacagattttgtggacggtcagcat
cattcttcaaatgtctccttcataaaaccagctttggagtttatcaaagaacgagagcag
aaagatgtaaataagaaaatgttgacagttattatgggagatgacccagattttgaagcg
aaaatgtttgagggtacagtacgagcaaagaaggaggctaagattgaagaaacgacaaaa
tacttcgtttctgaaaacactcctcaggacgatctagcatactcacattatagttgtgat
gcaactttaataactgctccatcttcgacatttggatggtggcttggatacctttcaaaa
ggacaagctgtttattatcaagatattcgatctacaaatgatgttaattataaaaaagga
gtactcgatcccgatgactttttcgttccaagctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATCTTCACTTGACTGGTCATT 102 327 481 Antisense
TAAAACCAGCCATTGATTTCTCGCC 625 639 560 Antisense
CCACTTCCCAACTCTGATAGCAGTA 456 275 583 Antisense
GACGGTCAGCATCATTCTTCAAATG 142 377 649 Antisense
GTCTCCTTCATAAAACCAGCTTTGG 261 471 673 Antisense
ACTTCGTTTCTGAAAACACTCCTCA 400 103 842 Antisense
CACTCCTCAGGACGATCTAGCATAC 174 199 858 Antisense
CTTTAATAACTGCTCCATCTTCGAC 245 223 905 Antisense
TGGTGGCTTGGATACCTTTCAAAAG 364 543 937 Antisense
AGGAGTACTCGATCCCGATGACTTT 604 45 1017 Antisense
CGATGACTTTTTCGTTCCAAGCTGG 505 247 1032 Antisense
Sequence Source Affymetrix Proprietary Database