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[176029_at]

Description Y55F3C.B /REP_DB=WormBase Gene ID /WP=CE22560 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 10      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 12.8
(-3)
A 		58.4
(2.7)
A 		61.2
(3)
A 		12.6
(-3)
A 		49
B 45.3
(1)
A 		61.4
(2.7)
A 		64.7
(3)
A 		6.2
(-3)
A 		59
C 35.1
(-3)
A 		63.9
(3)
A 		63.6
(2.9)
A 		42.4
(-1.5)
A 		29
avr 31.1
(-1.5) 		61.2
(2.7) 		63.2
(3) 		20.4
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 16.1
(-1.7)
A 		33.7
(1.5)
A 		25
(-0.1)
A 		24.5
(-0.2)
A 		9.3
(-3)
A 		41.7
(3)
A 		32
B 7.9
(-3)
A 		32
(-0.5)
A 		64.7
(3)
A 		8.8
(-2.9)
A 		36.4
(0)
A 		13.9
(-2.4)
A 		57
C 37.3
(1.6)
A 		45.5
(3)
A 		20.6
(-1.1)
A 		9.2
(-3)
A 		29.2
(0.3)
A 		20.8
(-1.1)
A 		36
avr 20.4
(-1.4) 		37.1
(3) 		36.8
(2.9) 		14.2
(-3) 		25
(-0.2) 		25.5
(-0) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 4.6
(-1.8)
A 		12.7
(1.6)
A 		16
(3)
A 		1.8
(-3)
A 		14
B 14.4
(2.7)
A 		15.2
(3)
A 		15
(2.9)
A 		1.3
(-3)
A 		14
C 11.6
(-1.2)
A 		18.4
(1.5)
A 		22.2
(3)
A 		7.1
(-3)
A 		15
avr 10.2
(-0.1) 		15.4
(2) 		17.7
(3) 		3.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3
(-2.9)
A 		12
(3)
A 		5.4
(-1.3)
A 		6.2
(-0.8)
A 		2.8
(-3)
A 		10.1
(1.8)
A 		9
B 2.8
(-2.8)
A 		10.7
(0.8)
A 		15.7
(3)
A 		2.3
(-3)
A 		14.8
(2.6)
A 		5.2
(-1.7)
A 		13
C 13.8
(3)
A 		13.9
(3)
A 		5.2
(-1.4)
A 		1.9
(-3)
A 		9.4
(0.8)
A 		7
(-0.5)
A 		12
avr 6.5
(-0.9) 		12.2
(3) 		8.8
(0.7) 		3.5
(-3) 		9
(0.8) 		7.4
(-0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19129
Sequence Type Exemplar sequence
Representative Public ID Y55F3C.B NCBI
Target Description Y55F3C.B /REP_DB=WormBase Gene ID /WP=CE22560 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067575
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000015002 ENSEMBL cdna:SNAP chromosome:CEL140:IV:717925:719451:-1 11/11 None
GENEFINDER00000015023 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:717925:719451:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:717930-730015(-) 94.97 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86308 Hypothetical protein Y55F3C.10 [Caenorhabditis elegans] 0.0
blast AAW57824 Serpentine receptor, class t protein 23 [Caenorhabditis elegans] ref|NP_499979.2| Serpentine Receptor, class T family member (srt-23) [Caenorhabditis elegans] 1.0E-180
blast AAK72079 Serpentine receptor, class t protein 24 [Caenorhabditis elegans] ref|NP_499976.2| Serpentine Receptor, class T family member (srt-24) [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.5E-115
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015002 7 40-62,75-97,112-134,155-177,204-226,247-269,274-296
GENEFINDER00000015023 7 40-62,75-97,112-134,155-177,204-226,247-269,274-296
Sequence
Target Sequence 
>C. ELEGANS:176029_AT
atgtatttcactgtagccattcccatcttgtatacgatttattcaattttcttcacaaaa
ccactgcttttcaactcgaactacatgagttggttcttcaatccaatgattcctggcaac
gaggcacccaattacataaatatctcccatactgttaacaattgtgtggtctccttggca
actacagcgatatactcttatctttgtgttatattgtttgcaaaaagcaaacatttccga
tcagagtccatttcgagaactcagactcagatcttcttccaatccgtcctaatttgctct
ttcaatgcaatcgctgcctacatctatgtctacatgcaattcttctattctcccccagcg
gttgtgctcattgggcaactggcatggcagtgtgctcacgggtccgtttgcatcgtgtac
atcacaatgaacaagaccgtccgaattggatttattgactttatagtgccacgttcaatt
cgagatagagtaggatccaacagaacaacagctacacttcgtccagtactcagagttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATTTCACTGTAGCCATTCCCA 306 45 3754 Antisense
GCCATTCCCATCTTGTATACGATTT 564 281 3769 Antisense
CAAAACCACTGCTTTTCAACTCGAA 657 189 3809 Antisense
GGCAACGAGGCACCCAATTACATAA 361 533 3868 Antisense
AACAATTGTGTGGTCTCCTTGGCAA 543 133 3910 Antisense
AACATTTCCGATCAGAGTCCATTTC 555 137 3983 Antisense
CCGTCCTAATTTGCTCTTTCAATGC 491 265 4037 Antisense
GTGCTCATTGGGCAACTGGCATGGC 85 481 4117 Antisense
ATAGTGCCACGTTCAATTCGAGATA 264 19 4216 Antisense
CAGAACAACAGCTACACTTCGTCCA 435 205 4254 Antisense
ACTTCGTCCAGTACTCAGAGTTGTC 450 103 4269 Antisense
Sequence Source Affymetrix Proprietary Database